View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19174_low_11 (Length: 214)

Name: NF19174_low_11
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19174_low_11
NF19174_low_11
[»] chr3 (5 HSPs)
chr3 (17-196)||(33095975-33096149)
chr3 (109-163)||(40878226-40878280)
chr3 (120-180)||(54923500-54923560)
chr3 (109-163)||(51053649-51053703)
chr3 (109-141)||(31812266-31812298)
[»] chr5 (3 HSPs)
chr5 (109-180)||(22792153-22792224)
chr5 (109-180)||(26526527-26526598)
chr5 (109-158)||(13542847-13542895)
[»] chr4 (6 HSPs)
chr4 (109-192)||(13849357-13849441)
chr4 (109-180)||(22988034-22988105)
chr4 (109-180)||(22717112-22717183)
chr4 (109-158)||(27031857-27031906)
chr4 (112-156)||(15540061-15540105)
chr4 (125-192)||(46343330-46343398)
[»] chr1 (5 HSPs)
chr1 (109-192)||(7204551-7204635)
chr1 (125-180)||(236584-236639)
chr1 (125-180)||(11064322-11064377)
chr1 (112-163)||(40685560-40685611)
chr1 (112-170)||(29511132-29511190)
[»] chr8 (7 HSPs)
chr8 (109-185)||(3728369-3728444)
chr8 (125-180)||(11098133-11098187)
chr8 (109-163)||(4312164-4312218)
chr8 (124-178)||(31291235-31291289)
chr8 (109-163)||(36442337-36442391)
chr8 (109-163)||(43149421-43149474)
chr8 (109-170)||(37817400-37817461)
[»] chr7 (3 HSPs)
chr7 (109-196)||(24333338-24333426)
chr7 (109-180)||(6328217-6328288)
chr7 (123-180)||(35289860-35289917)
[»] chr2 (2 HSPs)
chr2 (109-180)||(39417457-39417527)
chr2 (109-146)||(22999123-22999160)
[»] scaffold0027 (1 HSPs)
scaffold0027 (112-192)||(19359-19440)
[»] chr6 (1 HSPs)
chr6 (110-163)||(31242034-31242087)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 33096149 - 33095975
Alignment:
Q  17 cataggtatgttttcttccttgaatagtgtcttaccttacttactaccacttgagtaacataagtcatcgtaaactnnnnnnnnnnnnnnnnaagtggag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||    
T  33096149 cataggtatgttttcttccttgaatagtgtcttaccttacttactaccacttgagtaacataagtcatcgtaaact------cacacacacaaagtggag 33096056  T
Q  117 gtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga-tctggacttatgtgac 196  Q
    ||||||||||| |||||||| |||||||||||| |||||||| ||||| ||||||| ||||||| |  |||||||||||||    
T  33096055 gtgtcggagtttgaaccccaatcatgacgttcggcctaacaatttcgtcatttttgccagttgagttaggacttatgtgac 33095975  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 40878226 - 40878280
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    |||||||||| |||| ||||||||| || ||||||||||||||||||||| ||||    
T  40878226 aagtggaggtatcggggttcgaacctcaatcatgacgttcgacctaacaatttcg 40878280  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 54923560 - 54923500
Alignment:
Q  120 tcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||  ||||||  |||||||    
T  54923560 tcggagttcgaaccccggtcatgacgtccgacctaacaatttcgacatttttaccagttga 54923500  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 51053703 - 51053649
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    ||||| || |||||| |||||||||||  ||||||||||||||||||||| ||||    
T  51053703 aagtgaagttgtcggggttcgaaccccgatcatgacgttcgacctaacaatttcg 51053649  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 31812298 - 31812266
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcat 141  Q
    ||||||||||||||||||||||||||| |||||    
T  31812298 aagtggaggtgtcggagttcgaaccccggtcat 31812266  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 22792153 - 22792224
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||||||| ||||  ||||||| |||||||    
T  22792153 aagtggaggtgtcggggttcgaacccctgtcaagacgtccgacctaacaatttcggcatttttgccagttga 22792224  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 26526598 - 26526527
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    ||||||||||  ||||||||||||| | ||||||||||||| |||||||| ||||  ||||||| |||||||    
T  26526598 aagtggaggtaccggagttcgaacctcggtcatgacgttcggcctaacaatttcggtatttttgccagttga 26526527  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 13542847 - 13542895
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaa 158  Q
    ||||||||||||||||||||||| ||| |||||||||| | |||||||||    
T  13542847 aagtggaggtgtcggagttcgaa-cccggtcatgacgtccaacctaacaa 13542895  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 13849441 - 13849357
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 192  Q
    ||||||||||||||| |||||||||||  ||| |||||  |||||||||| ||||  ||||||||||||||| || |||||||||    
T  13849441 aagtggaggtgtcggggttcgaaccccgatcaagacgtctgacctaacaatttcgacatttttgtcagttgagctaggacttatg 13849357  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 22988034 - 22988105
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||| ||||| |||| |||||||| | ||||||||||||||||||||||| ||||  ||||||||| |||||    
T  22988034 aagtagaggtatcggggttcgaactctagtcatgacgttcgacctaacaatttcgacatttttgtcggttga 22988105  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 22717183 - 22717112
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||| ||||| |||| |||||||| | | ||||||||||||||||||||| ||||  ||||||||| |||||    
T  22717183 aagtagaggtatcggggttcgaactctaatcatgacgttcgacctaacaatttcgacatttttgtcggttga 22717112  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 27031857 - 27031906
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaa 158  Q
    ||||| ||||||||||||||||||| | |||||||||| |||||| ||||    
T  27031857 aagtgaaggtgtcggagttcgaaccacggtcatgacgtacgacctgacaa 27031906  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 15540105 - 15540061
Alignment:
Q  112 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaac 156  Q
    |||||||| || ||||||||||||| |||| ||||||||||||||    
T  15540105 tggaggtgccgaagttcgaaccccaatcataacgttcgacctaac 15540061  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 46343398 - 46343330
Alignment:
Q  125 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 192  Q
    ||||||||||| |||||||||| || |||||||| ||||  | ||||||||||||| || |||||||||    
T  46343398 gttcgaaccccggtcatgacgtccggcctaacaatttcggcacttttgtcagttgagctaggacttatg 46343330  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 7204551 - 7204635
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 192  Q
    |||||||||| |||| ||||||||||| ||||||| ||||| |||||||| ||||  ||||||| ||||||| || |||||||||    
T  7204551 aagtggaggtatcggggttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctaggacttatg 7204635  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 236639 - 236584
Alignment:
Q  125 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    ||||||||||| |||||||||| || |||||||| ||||  |||||||||||||||    
T  236639 gttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttga 236584  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 11064322 - 11064377
Alignment:
Q  125 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||||||||||||||||| |||||||| ||| |||||||  |||||| ||||||||    
T  11064322 gttcgaaccccagtcatggcgttcgacttaataaattcgacatttttatcagttga 11064377  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 40685611 - 40685560
Alignment:
Q  112 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    ||||||| |||||||||||||||| |||||||| | ||||||||||| ||||    
T  40685611 tggaggtatcggagttcgaaccccggtcatgacatccgacctaacaatttcg 40685560  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 29511190 - 29511132
Alignment:
Q  112 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttt 170  Q
    ||||||| |||| ||||||||||| |||||||| |||| |||||||| ||||| |||||    
T  29511190 tggaggtatcggggttcgaaccccggtcatgacattcggcctaacaatttcgtcatttt 29511132  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 3728369 - 3728444
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatctgg 185  Q
    |||||||||| |||| |||||||||||| ||||||| | ||||||||||| |||| |  ||||||||||||| ||||    
T  3728369 aagtggaggtatcggggttcgaaccccaatcatgacatccgacctaacaatttcg-atattttgtcagttgagctgg 3728444  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 11098133 - 11098187
Alignment:
Q  125 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||||||||||||||||||| ||||||||||||| |||| |  |||||||||||||    
T  11098133 gttcgaaccccagtcatgacattcgacctaacaatttcg-atattttgtcagttga 11098187  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 4312218 - 4312164
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    ||||||||||  |||||||||||||||||||||| | | ||||||||||| ||||    
T  4312218 aagtggaggtaccggagttcgaaccccagtcatggcatccgacctaacaatttcg 4312164  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 31291289 - 31291235
Alignment:
Q  124 agttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagtt 178  Q
    ||||||||||||  |||||||||||| |||||||| ||||  |||||||||||||    
T  31291289 agttcgaaccccgatcatgacgttcggcctaacaatttcggcatttttgtcagtt 31291235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 36442391 - 36442337
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    ||||||||||  |||||||||||||||| ||||||| | ||||||||||| ||||    
T  36442391 aagtggaggtaccggagttcgaaccccaatcatgacatccgacctaacaatttcg 36442337  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 43149421 - 43149474
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    |||||||||||||||||||||||||  ||| ||||||| ||||||||||| ||||    
T  43149421 aagtggaggtgtcggagttcgaaccttagt-atgacgtccgacctaacaatttcg 43149474  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 37817461 - 37817400
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttt 170  Q
    |||||||||| |||| ||||||||||| |||||| | | ||||||||||| ||||| |||||    
T  37817461 aagtggaggtatcggggttcgaaccccggtcatggcatccgacctaacaatttcgtcatttt 37817400  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 24333426 - 24333338
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatgtgac 196  Q
    ||||||||||   ||||||||||||||  |||||||| ||| |||||||| ||||  |||||||| |||||| || |||||||||||||    
T  24333426 aagtggaggtactggagttcgaaccccgatcatgacgctcggcctaacaatttcgacatttttgtaagttgagctaggacttatgtgac 24333338  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 6328217 - 6328288
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||||||||| |||| |||||||||| ||||||||||| | ||||||||| || |  ||||||| |||||||    
T  6328217 aagtggaggtatcggggttcgaaccctagtcatgacgtccaacctaacaattttgacatttttgccagttga 6328288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 35289917 - 35289860
Alignment:
Q  123 gagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||||||||||||| |||||||||  |||||||||| |||   |||||||||||||||    
T  35289917 gagttcgaaccccaatcatgacgtctgacctaacaatttcagcatttttgtcagttga 35289860  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 39417527 - 39417457
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 180  Q
    |||||||| | |||||||||||||||| |||||||| | || |||||||| ||||  |||||||||||||||    
T  39417527 aagtggagatatcggagttcgaacccc-gtcatgacatccggcctaacaatttcggtatttttgtcagttga 39417457  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 22999160 - 22999123
Alignment:
Q  109 aagtggaggtgtcggagttcgaaccccagtcatgacgt 146  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  22999160 aagtggaggtgtcggggttcgaaccccggtcatgacgt 22999123  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 19359 - 19440
Alignment:
Q  112 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 192  Q
    ||||||| |||| |||||||||||| ||||||||| || |||||||| |||   ||||||| ||||||| || |||||||||    
T  19359 tggaggtatcggggttcgaaccccaatcatgacgtccggcctaacaatttcaacatttttgccagttgaactaggacttatg 19440  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 31242034 - 31242087
Alignment:
Q  110 agtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 163  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||| ||||    
T  31242034 agtggaggtgtcgggattcgaaccccggtcatgacgtccggcctaacaatttcg 31242087  T

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