View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19174_low_12 (Length: 201)
Name: NF19174_low_12
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19174_low_12 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 5920556 - 5920741
Alignment:
| Q |
16 |
atgaacaatgatagaagtattatttggaagattaacacgaacagatttgattctatcgaaagaagtaaaatatgactagttggaacatatatgttaattt |
115 |
Q |
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| T |
5920556 |
atgaacaatgatagaagtattatttggaagattaacacgaacaggtttgattctatgggaagaagtaaaatatgacaagttggaacatatatgttaattt |
5920655 |
T |
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| Q |
116 |
gctcctgaatctagaagccagtaagtaggtttagaaggtatacttgcgttatcaggaggagtagcagagatgctaatagaaacaaa |
201 |
Q |
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| T |
5920656 |
gctcctgaatctagaagccagtaattatgtttagaaggtatacctgcgttatcaggaggagtagcagagatgctagtagaaacaaa |
5920741 |
T |
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Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 20324865 - 20325050
Alignment:
| Q |
16 |
atgaacaatgatagaagtattatttggaagattaacacgaacagatttgattctatcgaaagaagtaaaatatgactagttggaacatatatgttaattt |
115 |
Q |
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||||||||| |||||||| ||||| ||||||||||| ||||||| ||||||||||| |||||||||||| | || |||||| |||||||||| |||| |
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| T |
20324865 |
atgaacaataatagaagttttattaggaagattaactcgaacaggtttgattctatgcaaagaagtaaaaaaggaaaggttggagcatatatgttcattt |
20324964 |
T |
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| Q |
116 |
gctcctgaatctagaagccagtaagtaggtttagaaggtatacttgcgttatcaggaggagtagcagagatgctaatagaaacaaa |
201 |
Q |
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| T |
20324965 |
gctcctgaatctagaagccagtaatagggtttagaagatataccttcagtatcatgaggagaagcagaaatgttattggaaacaaa |
20325050 |
T |
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