View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19174_low_2 (Length: 504)
Name: NF19174_low_2
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19174_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 16715485 - 16715852
Alignment:
| Q |
1 |
agacatagttatgtctacgttcttgaaatacttgtatattgtctcttatatttgcaagtgaaagttatatctttttcttctcaaagtacaacttgattga |
100 |
Q |
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| T |
16715485 |
agacatagttatgtctacgttcttgaaatacttgtatattgtctcttatatttgcaagtgaaagttatatctttttcttctcaaagtacaacttgattga |
16715584 |
T |
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| Q |
101 |
aaatctatctattatcactttttgttactcttgagccaagcaaaaattcaaagaataaaaagtctcctagcgaacatggagaataaatgtgtgagatgat |
200 |
Q |
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| T |
16715585 |
aaatctatctattatcactttttgttacttttgagccaagcaaaaattcaaagaataaaaagtctcctagcgaacatggagaataaatgtgtgagatgat |
16715684 |
T |
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| Q |
201 |
tgacttaacttggagtatccaaccagggtaatctagttattgaaatgagcgttccttggtggcactggcatttgaaattgaatgatgaccttaacctcga |
300 |
Q |
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| T |
16715685 |
tgacttaacttggagtatccaaccagggtaatctagttattgaaatgagtgttccttggtggcactggcatttgaaattgaatgatgaccttaacctcga |
16715784 |
T |
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| Q |
301 |
cctagtagtggatgaaggttggcccattcatatcaacgttg-aagattatttctttttcacaaatatg |
367 |
Q |
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| T |
16715785 |
cttagtagtgggtgaaggttggcccattcatatcaacgttgaaaaatgatttatttttcacaaatatg |
16715852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 4700583 - 4700550
Alignment:
| Q |
462 |
gacaaaaaatattatttcttatttttagtataat |
495 |
Q |
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| T |
4700583 |
gacaaacaatattatttcttatttttagtataat |
4700550 |
T |
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