View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19174_low_4 (Length: 443)
Name: NF19174_low_4
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19174_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 208 - 443
Target Start/End: Complemental strand, 46700786 - 46700551
Alignment:
| Q |
208 |
gcatgtggggtttttaatttaagtgaagtggttgaaacttgaacaattcaatttgtgtttttatttgctatttttgatgacttgcttttgtgatctggat |
307 |
Q |
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| T |
46700786 |
gcatgtggggtttttaatttaagtgaagtggttgaaacttgaacaattcaatttgtgtttttatttgctatttttgatgacttgcttttgtgatctggat |
46700687 |
T |
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| Q |
308 |
atatctctcaaagtgcaatatttttcccatcaatgctactcttttcatatattttatacaatgtttctttcaaaattctttgtcttctctatcaaatcgg |
407 |
Q |
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| T |
46700686 |
atatcgctcaaagtgcaatatttttcccatcaatgctactcttttcatatattttatacaatgtttctttcaaaattctttgtcttctctatcaaatcgg |
46700587 |
T |
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| Q |
408 |
gaagtttcttgaagttttctcttcgccccattttct |
443 |
Q |
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| T |
46700586 |
gaagtttcttgaagttttctctttgccccattttct |
46700551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 46700979 - 46700913
Alignment:
| Q |
15 |
cagagaagaacacccctgtttccaagttagaagtggtttgtttcactttcacccctaaccattccca |
81 |
Q |
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| T |
46700979 |
cagagaagaacacccctgtttccaagttagaagtggtttgtttcactttcacccctaaccattccca |
46700913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 46678183 - 46678094
Alignment:
| Q |
332 |
tcccatcaatgctactcttttcatatattttatacaatgtttctttcaaaattctttgtcttctctatcaaatcgggaagtttcttgaag |
421 |
Q |
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| T |
46678183 |
tcccattaatgctactcttctcatataatgtatgccatgtttctttcaaagttctttgtcttcgctatcaaattgggaaatttcttgaag |
46678094 |
T |
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