View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19174_low_6 (Length: 353)

Name: NF19174_low_6
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19174_low_6
NF19174_low_6
[»] chr3 (5 HSPs)
chr3 (17-190)||(53837382-53837555)
chr3 (15-175)||(53833798-53833959)
chr3 (15-71)||(7909524-7909578)
chr3 (20-71)||(24734262-24734313)
chr3 (147-187)||(34322141-34322181)
[»] chr5 (6 HSPs)
chr5 (15-174)||(33827603-33827762)
chr5 (142-190)||(11128726-11128774)
chr5 (94-167)||(23687646-23687719)
chr5 (94-163)||(23755635-23755704)
chr5 (94-163)||(23821091-23821160)
chr5 (147-180)||(41824848-41824881)
[»] chr1 (3 HSPs)
chr1 (17-175)||(47833917-47834075)
chr1 (15-72)||(26310395-26310450)
chr1 (142-173)||(25588927-25588958)
[»] chr6 (3 HSPs)
chr6 (17-167)||(353114-353264)
chr6 (19-71)||(14802893-14802945)
chr6 (147-186)||(14803019-14803058)
[»] chr2 (3 HSPs)
chr2 (44-159)||(27648486-27648601)
chr2 (17-175)||(36338803-36338960)
chr2 (17-71)||(44686131-44686185)
[»] chr4 (3 HSPs)
chr4 (164-256)||(6804457-6804549)
chr4 (17-96)||(54572968-54573047)
chr4 (118-178)||(54573488-54573549)
[»] scaffold0210 (1 HSPs)
scaffold0210 (142-175)||(15219-15252)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 53837555 - 53837382
Alignment:
Q  17 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttgatg 116  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  53837555 aaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctattatgtttagagttctattaatttgatg 53837456  T
Q  117 ctaatatttcttgttactgattaccttataataattctatgtctaatttttcctacaatcttaagagtattttg 190  Q
    |||||||||||| || || ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  53837455 ctaatatttcttattgcttattaccttataataattttatgtctactttctcctacaatcttaagagtattttg 53837382  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 53833959 - 53833798
Alignment:
Q  15 caaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttga 114  Q
    |||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53833959 caaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagtttagttgttctctattatattatatttagagttctattaatttga 53833860  T
Q  115 tgctaatatttcttgttactgattaccttataataattctatgt-ctaatttttcctacaat 175  Q
    || ||||||||||| || || ||||||||||||||||||||||| ||| ||| |||||||||    
T  53833859 tgttaatatttcttattgcttattaccttataataattctatgtcctactttctcctacaat 53833798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 7909578 - 7909524
Alignment:
Q  15 caaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagttt 71  Q
    ||||||||||||||||||| ||| |  ||||||||||||||||||||| ||||||||    
T  7909578 caaaatactcttaagcccaatgcat--tgcacgcctcagtcaataatcaataagttt 7909524  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 24734313 - 24734262
Alignment:
Q  20 tactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagttt 71  Q
    ||||||||||  | ||||||||||||| |||||||||||||| |||||||||    
T  24734313 tactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttt 24734262  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 34322141 - 34322181
Alignment:
Q  147 ataattctatgtctaatttttcctacaatcttaagagtatt 187  Q
    |||||| |||||||||||||||| |||||||||| ||||||    
T  34322141 ataattatatgtctaatttttccaacaatcttaaaagtatt 34322181  T

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Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 33827603 - 33827762
Alignment:
Q  15 caaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  33827603 caaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatatttagagttctattaatttga 33827702  T
Q  115 tgctaatatttcttgttactgattaccttataataattctatgtctaatttttcctacaa 174  Q
    |||||||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||    
T  33827703 tgctaatatttcttattacttattaccttataatatttctctgtctaatttttcctacaa 33827762  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 11128774 - 11128726
Alignment:
Q  142 ttataataattctatgtctaatttttcctacaatcttaagagtattttg 190  Q
    ||||||||||||||| || ||||||||| || |||||||||||||||||    
T  11128774 ttataataattctatttccaatttttccaacgatcttaagagtattttg 11128726  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 23687719 - 23687646
Alignment:
Q  94 tttagagttctattaatttgatgctaatatttcttgttactgattaccttataataattctatgtctaattttt 167  Q
    ||||||||| |||||||||||| || ||||||||| ||  | || || || |||||||||||||||||| ||||    
T  23687719 tttagagttgtattaatttgatactgatatttcttattgtttatcactttgtaataattctatgtctaactttt 23687646  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 23755704 - 23755635
Alignment:
Q  94 tttagagttctattaatttgatgctaatatttcttgttactgattaccttataataattctatgtctaat 163  Q
    ||||||||| |||||||||||| || ||| ||||||||  | || || || |||||||||||||||||||    
T  23755704 tttagagttgtattaatttgatactgataattcttgttgtttatcactttttaataattctatgtctaat 23755635  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 23821160 - 23821091
Alignment:
Q  94 tttagagttctattaatttgatgctaatatttcttgttactgattaccttataataattctatgtctaat 163  Q
    ||||||||| |||||||||||| || ||| ||||||||  | || || || |||||||||||||||||||    
T  23821160 tttagagttgtattaatttgatactgataattcttgttgtttatcactttttaataattctatgtctaat 23821091  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 41824881 - 41824848
Alignment:
Q  147 ataattctatgtctaatttttcctacaatcttaa 180  Q
    ||||||||||||||||||||||| ||||||||||    
T  41824881 ataattctatgtctaatttttccaacaatcttaa 41824848  T

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Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 47833917 - 47834075
Alignment:
Q  17 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttgatg 116  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  47833917 aaatactcttaagcccaatgcttcatgcatgcctcagtcaataatcgataagtttacttgttctctattctattatatttagagatctattaatttgatg 47834016  T
Q  117 ctaatatttcttgttactgattaccttataataattctatgtctaatttttcctacaat 175  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  47834017 ctaatatttctcgttacttattaccttataataattctatgtctactttttcctacaat 47834075  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26310450 - 26310395
Alignment:
Q  15 caaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagttta 72  Q
    ||||||||||||||||| ||||| |||  || ||||||||||||||||||||||||||    
T  26310450 caaaatactcttaagcctagtgcatcg--caagcctcagtcaataatcgataagttta 26310395  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 25588927 - 25588958
Alignment:
Q  142 ttataataattctatgtctaatttttcctaca 173  Q
    ||||||||||||||||||||||||||||||||    
T  25588927 ttataataattctatgtctaatttttcctaca 25588958  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 353114 - 353264
Alignment:
Q  17 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttgatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||||| ||||||||||||||||    
T  353114 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtatttagaattctattaatttgatg 353213  T
Q  117 ctaatatttcttgttactgattaccttataataattctatgtctaattttt 167  Q
    |||||||||||||||  | |||||||||||||||||||||||||| |||||    
T  353214 ctaatatttcttgttgtttattaccttataataattctatgtctatttttt 353264  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14802893 - 14802945
Alignment:
Q  19 atactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagttt 71  Q
    |||||||||| ||||||| || ||||| ||||||| |||||||||||||||||    
T  14802893 atactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagttt 14802945  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 14803019 - 14803058
Alignment:
Q  147 ataattctatgtctaatttttcctacaatcttaagagtat 186  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  14803019 ataattctatgtttaatttttcctacagtcttaagagtat 14803058  T

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Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 27648486 - 27648601
Alignment:
Q  44 cacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttgatgctaatatttcttgttactgattacctt 143  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  27648486 cacgcctcaatcaataatcgataagtttacttgttctctattctattatatttagagctctattaatttgatgctaatatttcttgttacttattacctt 27648585  T
Q  144 ataataattctatgtc 159  Q
    ||||||||| ||||||    
T  27648586 ataataattatatgtc 27648601  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 36338960 - 36338803
Alignment:
Q  17 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatatttagagttctattaatttgatg 116  Q
    |||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||    
T  36338960 aaatactcttaaacc-agtgcttcgtgcacgcctcagtcaatattcgataagtttacatattctctattctattgtatttagagttctattaatttgatg 36338862  T
Q  117 ctaatatttcttgttactgattaccttataataattctatgtctaatttttcctacaat 175  Q
    |||||| |||||| |    |||||||||||||||||||||||   |||||||| |||||    
T  36338861 ctaataattcttgctgtctattaccttataataattctatgtggtatttttccaacaat 36338803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 44686185 - 44686131
Alignment:
Q  17 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagttt 71  Q
    ||||||||||||||||||||| |  |||| |||||||||||||||||| ||||||    
T  44686185 aaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttt 44686131  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 6804549 - 6804457
Alignment:
Q  164 ttttcctacaatcttaagagtattttgattgaagtttcattgatatagaattaattataatcaagaattattatactggttttattcatataa 256  Q
    |||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6804549 ttttccaacaatcttaagagcattttcatcgaagtttcattgatatagaattaattataatcaagaattattatactggttttattcatataa 6804457  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 54572968 - 54573047
Alignment:
Q  17 aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttgttctctattatattatattt 96  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  54572968 aaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 54573047  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 54573488 - 54573549
Alignment:
Q  118 taatatttcttgttactgat-taccttataataattctatgtctaatttttcctacaatctt 178  Q
    |||||||| |||||| | || ||||||||||||||||||||||||| |||||||||| ||||    
T  54573488 taatattttttgttatttatgtaccttataataattctatgtctaaattttcctacactctt 54573549  T

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Target: scaffold0210 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 15219 - 15252
Alignment:
Q  142 ttataataattctatgtctaatttttcctacaat 175  Q
    |||||||||||||||||||||||| |||||||||    
T  15219 ttataataattctatgtctaatttctcctacaat 15252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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