View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19174_low_9 (Length: 301)
Name: NF19174_low_9
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19174_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 46700245 - 46700526
Alignment:
| Q |
18 |
agatgtgaaacaagtaatcatcctgcatattttcaagcataaagatatgaagnnnnnnnnnttaaatagagtgagggaaaattccatgcatacacacaac |
117 |
Q |
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| T |
46700245 |
agatgtgaaacaagtaatcatcctgcatattttcaagcataaagatatgaa--aaaaaaaattaaatagagtgagggaaaattccatgcatacacacaac |
46700342 |
T |
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| Q |
118 |
atgaaagatcatctactgttacaataagaataccatggagactaatcatatcaggttataaacctaaagaatgtaaaagttgtaaaatgaaaataaagaa |
217 |
Q |
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| T |
46700343 |
atgaaagatcatctactgttacaataagaataccatggagactaatcatatcaggttataaacctaaagaatgtaaaagctgtaaaatgaaaataaagaa |
46700442 |
T |
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| Q |
218 |
gtgagttacattttaataattttgaggaaaagaaaacatcaaaccccatctaaatctggattaaaacaaaatcaacttgcttct |
301 |
Q |
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| T |
46700443 |
gtgagttacattttaataattttgaggaaaagaaaacatcaaaccccatctaaatctggattaaaacaaaatcaacttgcttct |
46700526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 46677919 - 46678039
Alignment:
| Q |
177 |
aaacctaaagaatgtaaaagttgtaaaatgaaaataaagaagtgagttacattttaataattttgaggaaaagaa----aacatcaaaccccatctaaat |
272 |
Q |
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| T |
46677919 |
aaacctaaagaatgtaaacgatgtaaaatgaaaacaa----gtgactgacattataataattttgaggaaagaaatttaaacatcaaaacccatcttaat |
46678014 |
T |
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| Q |
273 |
ctggattaaaacaaaatcaacttgc |
297 |
Q |
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| T |
46678015 |
ctgtatcaaaacaaaatcaacttgc |
46678039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 52894386 - 52894456
Alignment:
| Q |
93 |
ggaaaattccatgcatacacacaacatgaaagatcatctactgttacaataagaataccatggagactaat |
163 |
Q |
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| T |
52894386 |
ggaaaatttcatgcatacacacaacaagaaagatcatatattgttgcaataggaataccatggagattaat |
52894456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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