View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_106 (Length: 263)
Name: NF19175_high_106
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_106 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 587358 - 587480
Alignment:
| Q |
5 |
ttgtccgcttgcggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaaca |
104 |
Q |
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| T |
587358 |
ttgtccgcttgcggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaaca |
587457 |
T |
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| Q |
105 |
tggagttgggcatgaatgataca |
127 |
Q |
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| T |
587458 |
tggagttgggcatgaatgataca |
587480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 587517 - 587636
Alignment:
| Q |
134 |
tgtcatgccttgtggtcttggagaaacagttgagtcatgatagtgaagctacaatgcctcttaactcttggaacaaggagggttaattgttacatggaca |
233 |
Q |
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| T |
587517 |
tgtcatgccttgtggtcttggagaaacagttgagtcatcatagtgaagctacaatgcctcttaactcttggaacaaggagggttaattgttacatggaca |
587616 |
T |
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| Q |
234 |
atcaatataatcatcctatg |
253 |
Q |
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| T |
587617 |
atcaatataatcatcctatg |
587636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 32058052 - 32057965
Alignment:
| Q |
21 |
tatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatgga |
108 |
Q |
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| T |
32058052 |
tatggttgaatacagttattattaatcaaagagagaacttttttgaagcagatttgcagcattggattggcttaaatatgaacatgga |
32057965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 26799390 - 26799298
Alignment:
| Q |
17 |
ggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatggag |
109 |
Q |
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| T |
26799390 |
ggtatatggttgaatacagttggtatttatcaaagaaagagcttttttgaagcatatttgcagcattggattgacttaaatttgagcatggag |
26799298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 32057924 - 32057803
Alignment:
| Q |
137 |
catgccttgtggtcttggagaaac-agttgagtcatgatagtgaagctacaatgcctcttaactcttgga--------acaaggagggttaattgttaca |
227 |
Q |
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| T |
32057924 |
catgccttgtggttatggagaaacaagttgagttatgatagtaaagctacgatgtctcttaactcatggaaggagattacaacgagggttaattgttaga |
32057825 |
T |
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| Q |
228 |
tggacaatcaatataatcatcc |
249 |
Q |
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||||| ||||||||| |||||| |
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| T |
32057824 |
tggactatcaatatattcatcc |
32057803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 26799280 - 26799236
Alignment:
| Q |
161 |
agttgagtcatgatagtgaagctacaatgcctcttaactcttgga |
205 |
Q |
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| T |
26799280 |
agttgagtcatgatagtcaagctatgatgcctcttaactcgtgga |
26799236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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