View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_109 (Length: 257)
Name: NF19175_high_109
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_109 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 18237147 - 18237376
Alignment:
| Q |
28 |
actttctacggtactcgtacaaaggacacggtctaaaggagtttacaaagagatacctaaacaaagcaataaagttgatttgagttggaattcaaccgca |
127 |
Q |
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| T |
18237147 |
actttctacagtactcatacaaaggacacggtctaaaggagtttacaaatagatacctaaacaaagcaataaggttgatttgagttggaattcaaccgca |
18237246 |
T |
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| Q |
128 |
acactaaaatcattatccagaacaagcaacccctcagtaacccacaccttcctcttctggcttccacaaccacttatcatcgtcttccctcaatgacaac |
227 |
Q |
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| T |
18237247 |
gtactaaaatcattatccaaaacaagcaacccctcagtaacccacaccttcctcttccggcttccacaaccacttatcatcgtcttccctcaatgacaac |
18237346 |
T |
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| Q |
228 |
gagcacagttctacaccatgacaacgccca |
257 |
Q |
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||||| | |||||||||||||||||||||| |
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| T |
18237347 |
gagcaaacttctacaccatgacaacgccca |
18237376 |
T |
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