View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_high_118 (Length: 248)

Name: NF19175_high_118
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_high_118
NF19175_high_118
[»] chr4 (11 HSPs)
chr4 (47-167)||(16032574-16032694)
chr4 (52-138)||(56478897-56478983)
chr4 (52-138)||(6980524-6980610)
chr4 (166-235)||(12094857-12094925)
chr4 (165-231)||(6898758-6898823)
chr4 (169-235)||(9451245-9451310)
chr4 (166-235)||(24257703-24257771)
chr4 (47-92)||(37342028-37342073)
chr4 (166-231)||(9199512-9199576)
chr4 (166-199)||(27067874-27067907)
chr4 (72-128)||(34708226-34708282)
[»] chr7 (7 HSPs)
chr7 (52-146)||(39444989-39445083)
chr7 (45-146)||(40722595-40722696)
chr7 (52-146)||(85266-85360)
chr7 (73-146)||(48829730-48829803)
chr7 (166-235)||(20077344-20077412)
chr7 (166-234)||(39742297-39742364)
chr7 (48-80)||(48829124-48829156)
[»] chr3 (16 HSPs)
chr3 (52-144)||(14175690-14175782)
chr3 (52-144)||(54418911-54419003)
chr3 (47-145)||(953007-953105)
chr3 (52-146)||(41828191-41828285)
chr3 (52-146)||(41828014-41828109)
chr3 (166-235)||(1529165-1529234)
chr3 (164-235)||(39484810-39484881)
chr3 (165-199)||(15291460-15291494)
chr3 (189-235)||(37605422-37605468)
chr3 (165-231)||(52041390-52041455)
chr3 (165-196)||(1141743-1141774)
chr3 (166-235)||(22424372-22424440)
chr3 (166-199)||(49235514-49235547)
chr3 (52-108)||(50833764-50833821)
chr3 (52-108)||(50842032-50842089)
chr3 (165-233)||(42655772-42655839)
[»] chr1 (10 HSPs)
chr1 (52-146)||(42772462-42772556)
chr1 (52-138)||(23260957-23261043)
chr1 (52-146)||(47914580-47914674)
chr1 (61-145)||(51854491-51854575)
chr1 (63-146)||(28238169-28238252)
chr1 (165-235)||(46555501-46555571)
chr1 (166-235)||(15700721-15700789)
chr1 (166-235)||(22964007-22964075)
chr1 (166-216)||(24819183-24819233)
chr1 (48-89)||(50378362-50378404)
[»] chr2 (11 HSPs)
chr2 (49-138)||(12447158-12447247)
chr2 (52-145)||(43800395-43800488)
chr2 (43-138)||(9059860-9059955)
chr2 (164-235)||(28926073-28926143)
chr2 (165-235)||(32281485-32281554)
chr2 (166-235)||(38996522-38996590)
chr2 (47-92)||(25890498-25890543)
chr2 (164-199)||(6667461-6667496)
chr2 (169-236)||(21922337-21922403)
chr2 (165-235)||(22625389-22625458)
chr2 (166-199)||(28125536-28125569)
[»] chr5 (5 HSPs)
chr5 (52-138)||(29656902-29656988)
chr5 (166-242)||(37337323-37337399)
chr5 (163-235)||(26110685-26110757)
chr5 (165-242)||(11300758-11300835)
chr5 (166-235)||(23045484-23045553)
[»] chr6 (9 HSPs)
chr6 (52-145)||(29535838-29535931)
chr6 (168-242)||(15296147-15296221)
chr6 (165-235)||(31665630-31665700)
chr6 (47-119)||(29535398-29535470)
chr6 (47-119)||(29535628-29535700)
chr6 (165-235)||(31442516-31442585)
chr6 (166-235)||(826734-826802)
chr6 (166-235)||(20915999-20916067)
chr6 (51-126)||(8609464-8609540)
[»] chr8 (8 HSPs)
chr8 (165-235)||(42315341-42315411)
chr8 (166-235)||(23828343-23828412)
chr8 (164-235)||(45244286-45244357)
chr8 (84-146)||(9375442-9375504)
chr8 (166-235)||(26083903-26083971)
chr8 (164-200)||(7496756-7496792)
chr8 (165-235)||(26981034-26981103)
chr8 (166-235)||(3193176-3193244)
[»] scaffold0007 (1 HSPs)
scaffold0007 (60-146)||(252232-252318)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 16032694 - 16032574
Alignment:
Q  47 aatctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  16032694 aatctcttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaaaa 16032595  T
Q  147 gtaagcacatccttcacttat 167  Q
    |||| ||||||||||||||||    
T  16032594 gtaaacacatccttcacttat 16032574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 56478983 - 56478897
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataac 138  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  56478983 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcactaaatgctaagtgagataac 56478897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 6980524 - 6980610
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataac 138  Q
    ||||||| ||||||||||||||||||||||| |||||| || |||||| |||||||| ||||||||||||||| |||||||||||||    
T  6980524 cttactccttaatcttattaggttgcaacaatttaaccttaaaaatttggctccaaagttgcagcattaaatgttaaatgagataac 6980610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 12094925 - 12094857
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaa-ttttaacctaatattttccctcc 12094857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 6898823 - 6898758
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttcc 231  Q
    ||||||||||||||||||||||||| |||||||||  |||||| ||| | |||||||||||||||||    
T  6898823 tatctttcttactaaagcttgtttgatcaagctattggtaaccctaa-tcttaacctaatattttcc 6898758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 9451245 - 9451310
Alignment:
Q  169 tttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||||| ||||||||||||   | ||| ||| |||||||||||||||||||||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaa-ttttaacctaatattttccctcc 9451310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 24257703 - 24257771
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||||||||||| ||   | ||| ||| ||||||||||||||||| |||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaa-ttttaacctaatatttttcctcc 24257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 37342073 - 37342028
Alignment:
Q  47 aatctcttactctttaatcttattaggttgcaacaacttaacccta 92  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||    
T  37342073 aatcccttactcattaatcttattaggttgcaataacttaacccta 37342028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 9199512 - 9199576
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttcc 231  Q
    ||||||||||||||||||||| ||||||||| |||    ||| ||| |||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaa-ttttaacctaatattttcc 9199576  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 27067874 - 27067907
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctat 199  Q
    ||||||||||||||||||||||||||||| ||||    
T  27067874 atctttcttactaaagcttgtttggtcaaactat 27067907  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 34708226 - 34708282
Alignment:
Q  72 ggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaa 128  Q
    |||||||||||||||||||||||  ||| |||| |||| |||| |||||| ||||||    
T  34708226 ggttgcaacaacttaaccctagattttttgctctaaaaatgcatcattaattgctaa 34708282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 39444989 - 39445083
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  39444989 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaa 39445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 40722595 - 40722696
Alignment:
Q  45 ctaatctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaa 144  Q
    |||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||    
T  40722595 ctaatctcttactcctaaattttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataatcctaaa 40722694  T
Q  145 aa 146  Q
    ||    
T  40722695 aa 40722696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 85360 - 85266
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||||||||| ||||||||| |||||||    
T  85360 cttactccttaatcttattaggttgcaacaacttaaccctagaattttggctccaaaattgcaatattaaatgctaagtgagataaccctaaaaa 85266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 48829730 - 48829803
Alignment:
Q  73 gttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  48829730 gttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaa 48829803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 20077412 - 20077344
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||||||||||| |||    ||| ||| |||||||||||||||||||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaa-ttttaacctaatattttccctcc 20077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 39742364 - 39742297
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctc 234  Q
    |||||||||||||||||||||||| |||||||||   ||||| ||| | ||||||||||||||||||||    
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaa-tcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 48829124 - 48829156
Alignment:
Q  48 atctcttactctttaatcttattaggttgcaac 80  Q
    ||||||||||| |||||||||||||||||||||    
T  48829124 atctcttactccttaatcttattaggttgcaac 48829156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 14175782 - 14175690
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaa 144  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  14175782 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaa 14175690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 54418911 - 54419003
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaa 144  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  54418911 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaaatgagataaccctaaa 54419003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 953105 - 953007
Alignment:
Q  47 aatctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaa 145  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  953105 aatcccttactccttaatcttattaggttgcaacaacttaaccctagaaatttagctcaaaaattacagcattaaatgctaaatgagataaccctaaaa 953007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 41828191 - 41828285
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  41828191 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaa 41828285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 41828014 - 41828109
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaa-ccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||||| || ||||||||||||| ||||||||| |||||||    
T  41828014 cttactccttaatcttattaggttgcaacaacttaaaccctaaaaatttggctccaaaattacaacattaaatgctaagtgagataaccctaaaaa 41828109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 1529165 - 1529234
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctcc 1529234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 39484881 - 39484810
Alignment:
Q  164 ttatctttcttactaaagcttgtttggtcaagctataag-taaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||||||||||||||||| | | ||| | | |||||||||||||||||||||||    
T  39484881 ttatctttcttactaaagcttgtttggtcaagctatatgttcaccct-agttttaacctaatattttccctcc 39484810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 15291460 - 15291494
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctat 199  Q
    |||||||||||||||||||||||||||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctat 15291494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 37605468 - 37605422
Alignment:
Q  189 ggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  37605468 ggtcaagctattagtaaccctaattcttaacctaatattttccctcc 37605422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 52041455 - 52041390
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttcc 231  Q
    |||||||||||||||||||||| ||||||||||||   | ||| ||| |||||||||||||||||||    
T  52041455 tatctttcttactaaagcttgtctggtcaagctattgttcaccctaa-ttttaacctaatattttcc 52041390  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 1141743 - 1141774
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagc 196  Q
    ||||||||||||||||||||||||||||||||    
T  1141743 tatctttcttactaaagcttgtttggtcaagc 1141774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 22424440 - 22424372
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||| || | ||||||||||||   | ||| ||||||| |||||||||||||||||||    
T  22424440 atctttcttactaaagtttatctggtcaagctattgttcaccctaatttt-aacctaatattttccctcc 22424372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 49235547 - 49235514
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctat 199  Q
    |||||||||||||||| |||||||||||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctat 49235514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 50833764 - 50833821
Alignment:
Q  52 cttactctttaatcttattagg-ttgcaacaacttaaccctagaaatttagctccaaa 108  Q
    ||||||||||||| |||||||| ||||||  ||||||||||| |||||| ||||||||    
T  50833764 cttactctttaatgttattaggtttgcaaacacttaaccctaaaaatttggctccaaa 50833821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 50842089 - 50842032
Alignment:
Q  52 cttactctttaatcttattagg-ttgcaacaacttaaccctagaaatttagctccaaa 108  Q
    ||||||||||||| |||||||| ||||||  ||||||||||| |||||| ||||||||    
T  50842089 cttactctttaatgttattaggtttgcaaacacttaaccctaaaaatttggctccaaa 50842032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 42655772 - 42655839
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccct 233  Q
    |||||||||||| ||||||||| ||||||||||||   | ||| ||| ||||||| |||||||||||||    
T  42655772 tatctttcttaccaaagcttgtctggtcaagctattgttcaccctaa-ttttaacataatattttccct 42655839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 42772462 - 42772556
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  42772462 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaa 42772556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 23260957 - 23261043
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataac 138  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  23260957 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataac 23261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 47914674 - 47914580
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  47914674 cttactccttaatcttattaggttgcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaa 47914580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 51854575 - 51854491
Alignment:
Q  61 taatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaa 145  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  51854575 taatcttattaggttgcaacaacttaaccctagaaatttggctccaagattgcaacattaaatgctaaatgagataaccctaaaa 51854491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 28238252 - 28238169
Alignment:
Q  63 atcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  28238252 atcttattaggttgcaacaacttaaccttagaaatttggctccaaaattgcagcattaaatgctaagtgagataaccctaaaaa 28238169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 46555501 - 46555571
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  46555501 tatctttattactaaagcttgtccggtcaagctattagtaaccctaattcttaacctaatattttccctcc 46555571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 15700721 - 15700789
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaa-ttttaacctagtattttccctcc 15700789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 22964007 - 22964075
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||| ||||||||||||||| ||||||||||||  |||||| ||| || ||||||||||||||||||||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaa-ttctaacctaatattttccctcc 22964075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 24819183 - 24819233
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaattttt 216  Q
    ||||| ||||| |||||||||||||||||||||| | ||||| ||||||||    
T  24819183 atcttacttaccaaagcttgtttggtcaagctattactaaccctaattttt 24819233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 50378362 - 50378404
Alignment:
Q  48 atctcttactctttaatcttattagg-ttgcaacaacttaacc 89  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  50378362 atctcttactctttaatcttattaggtttgcaacaactaaacc 50378404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 12447247 - 12447158
Alignment:
Q  49 tctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataac 138  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  12447247 tctcttactccttaatcttattaggttgcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataac 12447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 43800488 - 43800395
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaa 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||||| ||||||||||||| ||||||    
T  43800488 cttactccttaatcttattaggttgcaacaacttaaccctagaaatttgactccgaaattgcagtattaaatgttaaatgagataaccctaaaa 43800395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 9059955 - 9059860
Alignment:
Q  43 atctaatctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataac 138  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||| |||||||||    
T  9059955 atcttatcccttactccttaatcttattaggttgcaacaacttaaccctaaaaatttgactctaaaattgcagcattaaatgctaagtgagataac 9059860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 28926073 - 28926143
Alignment:
Q  164 ttatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||| ||||||||||    
T  28926073 ttatctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaat-ttttccctcc 28926143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 32281485 - 32281554
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||    
T  32281485 tatctttcttactaaagtttgtttggtcaagctattagtaaccctaa-ttttaacctagtattttccctcc 32281554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 38996590 - 38996522
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||| || |||||||||| || ||| ||| |||||||||||||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaa-ttttaacctaatattttccctcc 38996522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 25890543 - 25890498
Alignment:
Q  47 aatctcttactctttaatcttattaggttgcaacaacttaacccta 92  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  25890543 aatcccttactccttaatcttattaggttgcaacaacttaacccta 25890498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 6667461 - 6667496
Alignment:
Q  164 ttatctttcttactaaagcttgtttggtcaagctat 199  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6667461 ttatctttctttctaaagcttgtttggtcaagctat 6667496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 21922337 - 21922403
Alignment:
Q  169 tttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcct 236  Q
    |||||| ||||||||||| || ||||||||||| | ||| |||| || ||||||||||||||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatctt-aacctaatattttccctcct 21922403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 22625458 - 22625389
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||| ||||| ||||||||| ||  |  ||| ||| |||||||||||||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaa-ttttaacctaatattttccctcc 22625389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 28125536 - 28125569
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctat 199  Q
    ||||||||||||||||||||| ||||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctat 28125569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 29656988 - 29656902
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataac 138  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||    
T  29656988 cttactctttaatcttattaggttgcaacaacttaaccctataaatttggctccaaaattgcagcattaaatgctaagtgagataac 29656902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 37337323 - 37337399
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcctatgttt 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctccaatgttt 37337399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 26110685 - 26110757
Alignment:
Q  163 cttatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26110685 cttatctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcc 26110757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 11300835 - 11300758
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcctatgttt 242  Q
    |||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  11300835 tatctttcttactaaaacttgtctggtgaagctataagtaaccctaatttttaacctaatattttccctccaatgttt 11300758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 23045484 - 23045553
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||| |||||| |||| || |||||||||| || | | | ||| |||||||||||||||||||||    
T  23045484 atctttctttctaaagtttgtctgatcaagctatatgttaacctgattcttaacctaatattttccctcc 23045553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 29535931 - 29535838
Alignment:
Q  52 cttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaa 145  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||| |||||| ||||||    
T  29535931 cttactccttaatcttattaggttgcaacaatttaaccctagaaatttggctccaaaattgtagcatttaatgctaaatgtgataaccctaaaa 29535838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 15296147 - 15296221
Alignment:
Q  168 ctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcctatgttt 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctccaatgttt 15296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 31665700 - 31665630
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  31665700 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcc 31665630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 29535470 - 29535398
Alignment:
Q  47 aatctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcatt 119  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  29535470 aatcccttactccttaatcttattaggttgcaacaacttaaccctataaatttggctccaaaattgcagcatt 29535398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 29535700 - 29535628
Alignment:
Q  47 aatctcttactctttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcatt 119  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  29535700 aatcccttactccttaatcttattaggttgcaacaacttaaccctataaatttggcttcaaaattgcagcatt 29535628  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 31442516 - 31442585
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||||||||||||||||||| || |   ||| ||| |||||||||||||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaa-ttttaacctaatattttccctcc 31442585  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 826802 - 826734
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||| ||||| ||||||||||||   | ||| ||| |||||||||||||||||||||||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaa-ttttaacctaatattttccctcc 826734  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 20916067 - 20915999
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||| || |||||| ||| |  ||| ||||||| |||||||||||||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaatttt-aacctaatattttccctcc 20915999  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 8609540 - 8609464
Alignment:
Q  51 tcttactctttaatcttattaggt-tgca-acaacttaaccctagaaatttagctccaaaattgcagcattaaatgct 126  Q
    |||||||| ||||||||||||||| |||| |||| |||||||||||||||| ||||||||  ||| ||||||| ||||    
T  8609540 tcttactccttaatcttattaggtctgcatacaa-ttaaccctagaaatttggctccaaatctgctgcattaattgct 8609464  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 42315341 - 42315411
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  42315341 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcc 42315411  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 23828343 - 23828412
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcc 23828412  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 45244357 - 45244286
Alignment:
Q  164 ttatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    |||||||||||||||||| |||| |||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  45244357 ttatctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcc 45244286  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 9375504 - 9375442
Alignment:
Q  84 ttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    |||| ||||||||||| ||||||||| |||| ||||||||||||| ||||||||| |||||||    
T  9375504 ttaatcctagaaatttggctccaaaactgcaacattaaatgctaagtgagataaccctaaaaa 9375442  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 26083903 - 26083971
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||| ||||||||| |||    ||| ||| |||||||||||||||||||||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaa-ttttaacctaatattttccctcc 26083971  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 7496756 - 7496792
Alignment:
Q  164 ttatctttcttactaaagcttgtttggtcaagctata 200  Q
    |||||||||||||||||||||||||| ||||||||||    
T  7496756 ttatctttcttactaaagcttgtttgatcaagctata 7496792  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 26981034 - 26981103
Alignment:
Q  165 tatctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||||||| |||||| |||    ||| ||| ||||||||||||||||| |||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaa-ttttaacctaatatttttcctcc 26981103  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 3193244 - 3193176
Alignment:
Q  166 atctttcttactaaagcttgtttggtcaagctataagtaaccgtaatttttaacctaatattttccctcc 235  Q
    ||||||||||||||||||||| ||||||||  || | | | | ||| |||||||||||||||||||||||    
T  3193244 atctttcttactaaagcttgtctggtcaagtaattattcatcttaa-ttttaacctaatattttccctcc 3193176  T

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Target: scaffold0007 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 252232 - 252318
Alignment:
Q  60 ttaatcttattaggttgcaacaacttaaccctagaaatttagctccaaaattgcagcattaaatgctaaatgagataactctaaaaa 146  Q
    |||| ||||||||||||||||||||||| | ||||||||| | | |||||||||||||||||||||||| ||| ||||| |||||||    
T  252232 ttaaacttattaggttgcaacaacttaatcatagaaatttggtttcaaaattgcagcattaaatgctaagtgatataaccctaaaaa 252318  T

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