View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_high_120 (Length: 248)

Name: NF19175_high_120
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_high_120
NF19175_high_120
[»] chr1 (7 HSPs)
chr1 (1-230)||(11544562-11544791)
chr1 (4-117)||(44144878-44144991)
chr1 (4-118)||(44612087-44612201)
chr1 (121-179)||(44145340-44145398)
chr1 (4-72)||(44785738-44785806)
chr1 (129-179)||(44612545-44612595)
chr1 (129-182)||(16818067-16818120)
[»] scaffold0017 (4 HSPs)
scaffold0017 (5-118)||(173892-174005)
scaffold0017 (12-117)||(168890-168995)
scaffold0017 (128-182)||(169351-169405)
scaffold0017 (129-182)||(174259-174312)
[»] chr2 (4 HSPs)
chr2 (4-117)||(29228530-29228643)
chr2 (4-117)||(29341829-29341942)
chr2 (138-182)||(29228123-29228167)
chr2 (138-182)||(29341422-29341466)
[»] chr3 (4 HSPs)
chr3 (137-230)||(26728099-26728192)
chr3 (4-98)||(26727555-26727649)
chr3 (120-230)||(8342414-8342524)
chr3 (4-106)||(8333046-8333148)
[»] scaffold0061 (2 HSPs)
scaffold0061 (12-117)||(29797-29902)
scaffold0061 (128-182)||(29387-29441)
[»] chr5 (9 HSPs)
chr5 (13-98)||(29507755-29507840)
chr5 (13-98)||(29507971-29508056)
chr5 (13-98)||(29507611-29507696)
chr5 (13-107)||(29507530-29507624)
chr5 (13-98)||(29507683-29507768)
chr5 (13-98)||(29507827-29507912)
chr5 (13-98)||(29508043-29508128)
chr5 (13-98)||(29507899-29507984)
chr5 (16-98)||(29508115-29508197)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11544791 - 11544562
Alignment:
Q  1 ttcattccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11544791 ttcattccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattcctttccaactcggaaatcttt 11544692  T
Q  101 cattgttgcagtctctttcactttatggtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattcactattgcatctctatctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  11544691 cattgttgcagtctctttcactttatggtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcaatcacttgtgcatctctatctctc 11544592  T
Q  201 agagaacagtctagaaggcaagatctcaaa 230  Q
    ||||||||||||||||||||||||| ||||    
T  11544591 agagaacagtctagaaggcaagatcccaaa 11544562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 44144878 - 44144991
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcat 103  Q
    |||||| |||||||||| ||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  44144878 attcctgctcaacttgggaatctctcacgattgcgacaccttgattttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcat 44144977  T
Q  104 tgttgcagtctctt 117  Q
    | ||||||||||||    
T  44144978 tattgcagtctctt 44144991  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 44612087 - 44612201
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcat 103  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||| ||  |||||||||||| ||||||||| || |||||||| |||||||||||||    
T  44612087 attccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttcat 44612186  T
Q  104 tgttgcagtctcttt 118  Q
    |||||||||||||||    
T  44612187 tgttgcagtctcttt 44612201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 44145340 - 44145398
Alignment:
Q  121 ctttatggtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattc 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  44145340 ctttatggtaacttgttaagagataccattcctgatgattttggaaacataatgcattc 44145398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 44785806 - 44785738
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattgga 72  Q
    |||||| |||||||||| ||||||||||| ||| ||||||||||||| ||| |||||| ||||| ||||    
T  44785806 attcctactcaacttgggaatctctcacaattgcgacaccttgatctcagcaacaatggactcactgga 44785738  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 44612545 - 44612595
Alignment:
Q  129 taacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattc 179  Q
    ||||||||| ||||||||||||||| |||||||||| ||| ||||||||||    
T  44612545 taacttgttgagaggtaccattcctaatgattttggaaacataatgcattc 44612595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 16818067 - 16818120
Alignment:
Q  129 taacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattcact 182  Q
    |||||||||||||||||||||||  |||||||||||  || |||||||||||||    
T  16818067 taacttgttaagaggtaccattctagatgattttggttacataatgcattcact 16818120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 173892 - 174005
Alignment:
Q  5 ttccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcatt 104  Q
    |||||| | ||||||| ||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  173892 ttccttttgaacttggaaatctatcacaattgtgataccttgatcttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcatt 173991  T
Q  105 gttgcagtctcttt 118  Q
    ||||||||||||||    
T  173992 gttgcagtctcttt 174005  T

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Target: scaffold0017; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 168890 - 168995
Alignment:
Q  12 tcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcattgttgcag 111  Q
    ||||||||| ||||| ||||| ||| |||| ||||||||||||   ||||| || | ||||||||| || |||||||||||||||||||||||||||| |    
T  168890 tcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttcattgttgcgg 168989  T
Q  112 tctctt 117  Q
    ||||||    
T  168990 tctctt 168995  T

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Target: scaffold0017; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 169351 - 169405
Alignment:
Q  128 gtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattcact 182  Q
    |||||||||| |||||| | ||||||||||||||||| ||| |||||||||||||    
T  169351 gtaacttgttgagaggtcctattcctgatgattttggaaacataatgcattcact 169405  T

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Target: scaffold0017; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 174259 - 174312
Alignment:
Q  129 taacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattcact 182  Q
    ||||||||| |||||| ||||||| ||||||||||| ||| |||||||||||||    
T  174259 taacttgttgagaggtcccattccggatgattttggaaacataatgcattcact 174312  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 29228643 - 29228530
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcat 103  Q
    ||||||||||||||||| ||||||||||| |||  |||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||    
T  29228643 attccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttcat 29228544  T
Q  104 tgttgcagtctctt 117  Q
     |||| ||||||||    
T  29228543 cgttggagtctctt 29228530  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 29341942 - 29341829
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcat 103  Q
    ||||||||||||||||| ||||||||||| |||  |||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||    
T  29341942 attccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttcat 29341843  T
Q  104 tgttgcagtctctt 117  Q
     |||| ||||||||    
T  29341842 cgttggagtctctt 29341829  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 29228167 - 29228123
Alignment:
Q  138 aagaggtaccattcctgatgattttggcaacgtaatgcattcact 182  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  29228167 aagaggtaccattcctggtgattttgggaacataatgcattcact 29228123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 29341466 - 29341422
Alignment:
Q  138 aagaggtaccattcctgatgattttggcaacgtaatgcattcact 182  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  29341466 aagaggtaccattcctggtgattttgggaacataatgcattcact 29341422  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 26728099 - 26728192
Alignment:
Q  137 taagaggtaccattcctgatgattttggcaacgtaatgcattcactattgcatctctatctctcagagaacagtctagaaggcaagatctcaaa 230  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||  || ||||| | |||||||| ||||||||||||||||||||| ||||    
T  26728099 taagaggtactattcctgatgattttggcaacataatgcattcacttgtgaatctcgaactctcagacaacagtctagaaggcaagatcccaaa 26728192  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 26727555 - 26727649
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    ||||||||||||||||| || ||||||||||||  |||||||||||| ||| |||||||||||||||||| ||| || || ||||| || |||||    
T  26727555 attccttctcaacttggaaaactctcacagttgcaacaccttgatctcagccacaatgaactcattggaggaatcccttttcaactagggaatct 26727649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 8342414 - 8342524
Alignment:
Q  120 actttatggtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattcactattgcatctctatctctcagagaacagtctagaaggc 219  Q
    |||| ||| ||||||||||| ||||||||||| | ||||||||||||||  ||||||||||||  || || |||||||||| |  |||| ||||||||||    
T  8342414 acttcatgataacttgttaaaaggtaccattcatcatgattttggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggc 8342513  T
Q  220 aagatctcaaa 230  Q
    || ||| ||||    
T  8342514 aatatcccaaa 8342524  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 8333046 - 8333148
Alignment:
Q  4 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcat 103  Q
    |||||| |||||||||| ||||||||||| |||  ||||||| |||| ||    ||||| ||  ||||| |||| || |||||||||| |||||||||||    
T  8333046 attcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaaatctttcat 8333145  T
Q  104 tgt 106  Q
    |||    
T  8333146 tgt 8333148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 29902 - 29797
Alignment:
Q  12 tcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcattgttgcag 111  Q
    ||||||||| ||||| ||||| ||| |||| ||||||||||||   ||||| || | ||||||||| || |||||||||||||||||||||||||||| |    
T  29902 tcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttcattgttgcgg 29803  T
Q  112 tctctt 117  Q
    ||||||    
T  29802 tctctt 29797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 29441 - 29387
Alignment:
Q  128 gtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcattcact 182  Q
    |||||||||| |||||| | ||||||||||||||||| ||| |||||||||||||    
T  29441 gtaacttgttgagaggtcctattcctgatgattttggaaacataatgcattcact 29387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29507840 - 29507755
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  ||| |||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  29507840 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29508056 - 29507971
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  ||| |||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  29508056 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29507696 - 29507611
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  |||||||||||| ||| | |||||||||||||||| |||||| |||||||| ||||||||    
T  29507696 caacttggaaatctctcacaattgcaacaccttgatctcagcgaaaatgaactcattggagcaattcccttccaacttggaaatct 29507611  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 29507624 - 29507530
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatctttcattgtt 107  Q
    |||||||| ||||||||||| ||   |||||||||||| |||||||||||||| ||||||| ||| || || ||||||  |||||||||||||||    
T  29507624 caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttcattgtt 29507530  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29507768 - 29507683
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  |||||||||||| |||   |||||||||||||||| |||||| |||||||| ||||||||    
T  29507768 caacttggaaatctctcacaattgcaacaccttgatctcagcagaaatgaactcattggagcaattcccttccaacttggaaatct 29507683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29507912 - 29507827
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  ||||||||||||  || | |||||||||||||||| |||||| |||||||| ||||||||    
T  29507912 caacttggaaatctctcacaattgcaacaccttgatctcggcgaaaatgaactcattggagcaattcccttccaacttggaaatct 29507827  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29508128 - 29508043
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  ||||||||||||  || | |||||||||||||||| |||||| |||||||| ||||||||    
T  29508128 caacttggaaatctctcacaattgcaacaccttgatctcggcgaaaatgaactcattggagcaattcccttccaacttggaaatct 29508043  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29507984 - 29507899
Alignment:
Q  13 caacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    |||||||| ||||||||||| |||  ||||||||||||  ||   |||||||||||||||| |||||| |||||||| ||||||||    
T  29507984 caacttggaaatctctcacaattgcaacaccttgatctcggcggaaatgaactcattggagcaattcccttccaacttggaaatct 29507899  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29508197 - 29508115
Alignment:
Q  16 cttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattccattccaactcggaaatct 98  Q
    ||||| ||||||||||| |||  |||||||||||| ||    |||||||||||||||| |||||| |||||||| ||||||||    
T  29508197 cttggaaatctctcacaattgcaacaccttgatctcagaggtaatgaactcattggagcaattcccttccaacttggaaatct 29508115  T

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