View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_121 (Length: 248)
Name: NF19175_high_121
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_121 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35905096 - 35905333
Alignment:
| Q |
1 |
gcccatagtactcttccctgatcctgttgatttcgttccggttgtgtgagaatttccatagagaggcaaccaacttgatgtggtgtttgtgtatgaacct |
100 |
Q |
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| T |
35905096 |
gcccatagtactcttccctgatcctgttgatttcgttccggttgtgtgagaatttccatagagaggcaaccaacttgatgtggtgtttgtgtatgaacct |
35905195 |
T |
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| Q |
101 |
ggtatcagatataaaattagttaattacactagttagttgttattctcattggctatataaatcttatatactcttttagcgtaattgacgtttcatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35905196 |
ggtatcagatataaaattagttaattacactagttagttgttattctcattggctatataaatcttatatactcttttagcgtaattcacgtttcatatt |
35905295 |
T |
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| Q |
201 |
ctctcgttatgaatataattttcattttactttttctt |
238 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
35905296 |
ctctcgttatcaatataattttcattttactttttctt |
35905333 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 13868847 - 13868806
Alignment:
| Q |
117 |
ttagttaattacactagttagttgttattctcattggctata |
158 |
Q |
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| T |
13868847 |
ttagttagttacattagttagtcgttattctcattggctata |
13868806 |
T |
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