View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_128 (Length: 240)
Name: NF19175_high_128
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_128 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 9456720 - 9456506
Alignment:
| Q |
9 |
caagaatataaatatcatattgaaagtttgttnnnnnnnngttgtacgtttaaaaataacttggatgtaagaaaaccacaagaacaattgcaccaatgaa |
108 |
Q |
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| T |
9456720 |
caagaaaataaatatcatattgaaagtttgttaaaaaaaagttgtacatttaaaaataacttggatgtaagaaaaccacaagaacaattgcaccaatgaa |
9456621 |
T |
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| Q |
109 |
tggtgacaataacacaaattcataaagggttgttaattaaactaggaagcttcgatggcaacataacaccacttcaatggcaatataaattcatgttcta |
208 |
Q |
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| T |
9456620 |
tggtgacaataacacaaattcataaagggttgttaattaaactaggaagcttcaatggcaacataacaccacttcaatggcaacataaattcatgttcta |
9456521 |
T |
|
| Q |
209 |
caaaatacgatcatt |
223 |
Q |
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||||||||||||||| |
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| T |
9456520 |
caaaatacgatcatt |
9456506 |
T |
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