View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_132 (Length: 235)
Name: NF19175_high_132
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_132 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 25691233 - 25691420
Alignment:
| Q |
19 |
gtagggtggtccagagggttctattctgcgcatgctccttatcctacgcatcatcatcaagtcttgccataccaacatgatcaatgtcttcatgcaggtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25691233 |
gtagggtggtccagagggttctattctgcgcatgttccttatcctacgcatcatcatcaagtcttgccataccaacatgatcaatgtcttcatgcaggtc |
25691332 |
T |
|
| Q |
119 |
ttaatatctcttcaatgctatctcatcttattttttgcattcacattataatcaaacaagtaaacaactacaagtactaaccatccct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
25691333 |
ttaatatctcttcaatgctatctcatcttattttttgcattcacattataatcaagcaagtaaacagctacaagtaataaccatccct |
25691420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University