View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_15 (Length: 598)
Name: NF19175_high_15
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 32405868 - 32405277
Alignment:
| Q |
18 |
gaatcattacataagtatttgcaagttaaatctgttgtaactcccatttacaattctccttggctttgaatgttctttgtatttgggttatgtgtatttg |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405868 |
gaatcattacataaatatttgcaagttaaatctgttgtaactcccatttacaattctccttggctttgaatgttctttgtatttgggttatgtgtatttg |
32405769 |
T |
|
| Q |
118 |
agagtgaacaaatggaccttttccatgtataattcatcataataataacattataataagatcttatgttatgttacatccaatcaattatgtgggcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405768 |
agagtgaacaaatggaccttttccatgtataattcatcataataataacatt---ataagatcttatgttatgttacatccaatcaattatgtgggcatg |
32405672 |
T |
|
| Q |
218 |
tcaaggttgaaaatgatgatttaatctaaattgaatccaacatactataca-tttcttttttcaacaaaaccaaactcaatgcatttcattcaaaataaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405671 |
tcaaggttgaaaatgatgatttaatctaaattggatccaacatactatacatttttttttttcaacaaaaccaaactcaatgcatttcattcaaaataaa |
32405572 |
T |
|
| Q |
317 |
tgtagaaatacatgttgggatgaaattaaaaatatggtgcctaacatgcaacattgac------------------gcgacatggtatgtttgtccatga |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32405571 |
tgtagaaatacatgttgggatgaaattaaaaatatggtgcctaacatgcaacattgacgccctggctaagttatgagcgacatggtatgtttgtccatga |
32405472 |
T |
|
| Q |
399 |
ataaaacttattataaagtttggagagaaattcnnnnnnngatctaaaatcatttaaaatgactctcaattcaatttggttcctagaattatcaaagata |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405471 |
ataaaacttattataaagtttggagagaaattcaaaaaaagatctaaaatcatttaaaatgactctcaattcaatttggttcctagaattatcaaagata |
32405372 |
T |
|
| Q |
499 |
ccatccattacttctttgcaatcgagttcaatggttatcttcgataatcccaactcatcaagccaggtgagtgctttctttacacctatgcttct |
593 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32405371 |
ccatccactacttctttgcaatcgagttcaatggttatcttcgataatcccaactcatcaagccaggtgagtgctttctttacacctaagcttct |
32405277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 32435766 - 32435823
Alignment:
| Q |
30 |
aagtatttgcaagttaaatctgttgtaactcccatttacaattctccttggctttgaa |
87 |
Q |
| |
|
|||||| | |||||||||||||||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
32435766 |
aagtatcttcaagttaaatctgttgcaactcctatttacaattctccatggctctgaa |
32435823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 43621857 - 43621909
Alignment:
| Q |
30 |
aagtatttgcaagttaaatctgttgtaactcccatttacaattctccttggct |
82 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
43621857 |
aagtatctacaagttaaatctgttgttactcccatttataattctccctggct |
43621909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 43628309 - 43628366
Alignment:
| Q |
30 |
aagtatttgcaagttaaatctgttgtaactcccatttacaattctccttggctttgaa |
87 |
Q |
| |
|
||||| || ||||||||||| ||||||| || |||||||||||||| |||||||||| |
|
|
| T |
43628309 |
aagtacttacaagttaaatccattgtaacacctatttacaattctccctggctttgaa |
43628366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University