View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_17 (Length: 576)
Name: NF19175_high_17
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Original strand, 19962401 - 19962950
Alignment:
| Q |
14 |
agaaacaagagaagaagaactcatggtttcaccatcaacaggtgaaaacctaactctcaaacaagcttttttcatcaaatcttccatcaaacattcaaca |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962401 |
agaaacaaaagaagaagaactcatggtttcaccatcaaccggtgaaaacctaactctcaaacaagcttttttcatcaaatcttccatcaaacattcaaca |
19962500 |
T |
|
| Q |
114 |
cc---accaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccag |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19962501 |
ccaccaccaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacagccaaagttacaaccag |
19962600 |
T |
|
| Q |
211 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962601 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaa |
19962700 |
T |
|
| Q |
311 |
aagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962701 |
aagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagat |
19962800 |
T |
|
| Q |
411 |
ataaaggtttgttttggttactctcttttgggtaattctatttctacccctcttttgaacagtgaacaagaagcagaagcagaattgattgaagcaagaa |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962801 |
ataaaggtttgttttggttactctcttttgggtgattctatttctacccctcttttgaacagtgaacaagaagcagaagcagaattgattgaagcaagaa |
19962900 |
T |
|
| Q |
511 |
gaatgtttaataaaactaaagctaaaaaagttactcaaagtgcatggatg |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962901 |
gaatgtttaataaaactaaagctaaaaaagttactcaaagtgcatggatg |
19962950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Complemental strand, 20028002 - 20027450
Alignment:
| Q |
14 |
agaaacaagagaagaagaactcatggtttcaccatcaacaggtgaaaacctaactctcaaacaagcttttttcatcaaatcttccatcaaacattcaaca |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20028002 |
agaaacaaaagaagaagaactcatggtttcaccatcaacgggtgaaaacctaacactcagagaagcttttttcatcaaatcttccatcaaacactcaaca |
20027903 |
T |
|
| Q |
114 |
ccaccacc---ccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccag |
210 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
20027902 |
ccaccaccaccccttttctctattttctctcaaaccaccaccaattcgccattacaagtaaagtacaatggatggagaatacagccaaagttacaaccag |
20027803 |
T |
|
| Q |
211 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20027802 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatataccatgcaatcaaagcttctacttatgaaatcaa |
20027703 |
T |
|
| Q |
311 |
aagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagat |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20027702 |
aagggatgatgatttgatgcttcaacttgctaatagatggtgttccaagaccaacacctttgtgttcccttggggagaatcaacaatcacattggaagat |
20027603 |
T |
|
| Q |
411 |
ataaaggtttgttttggttactctcttttgggtaattctatttctacccctcttttgaacagtgaacaa---gaagcagaagcagaattgattgaagcaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
20027602 |
ataaaggtttgttttggttactctcttttgggtgattctatttccacccctcttttgaacagtgaacaagaagaagcagaagaagaattgattgaagcaa |
20027503 |
T |
|
| Q |
508 |
gaagaatgtttaataaaactaaagctaaaaaagttactcaaagtgcatggatg |
560 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||| ||| |||||| |
|
|
| T |
20027502 |
gaagaatgtttaacaaaacgaaagctaagaaagttactcaaactgcgtggatg |
20027450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 117 - 560
Target Start/End: Complemental strand, 20021072 - 20020638
Alignment:
| Q |
117 |
ccaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccagaatgga |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||| |||||| | || | | |||||||| |
|
|
| T |
20021072 |
ccaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagttaagtattatgggtggagagctccacaaga---------agaatgga |
20020982 |
T |
|
| Q |
217 |
acaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaaggga |
316 |
Q |
| |
|
| || ||||||| |||||| |||||||||||||| | ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
20020981 |
agaaatgggtcaacaaattaagaccaaagtttgaatttctatggatcaaaactggaatataccatgctatcacagcttctacttatgaaatcaaaaggga |
20020882 |
T |
|
| Q |
317 |
tgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagatataaag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20020881 |
tgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgtgttcccttggggagaatcaacaatcacattggaagatataaag |
20020782 |
T |
|
| Q |
417 |
gtttgttttggttactctcttttgggtaattctatttctacccctcttttgaacagtgaacaagaagcagaagcagaattgattgaagcaagaagaatgt |
516 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| | |||||||||| ||||||| ||||||| |
|
|
| T |
20020781 |
gtttgttttggttactctcttttgggtgattctatttctaaacctcttgagaacagtgaacaagaagcagatgaagaattgattaaagcaaggagaatgt |
20020682 |
T |
|
| Q |
517 |
ttaataaaactaaagctaaaaaagttactcaaagtgcatggatg |
560 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
20020681 |
ttaataaaactaaagctaaaaaagttggtcaaaggccatggatg |
20020638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 117 - 560
Target Start/End: Original strand, 19967206 - 19967643
Alignment:
| Q |
117 |
ccaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccagaatgga |
216 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||| || |||| ||||||| ||| ||||||| | | ||| | ||||||| |
|
|
| T |
19967206 |
ccaccccatttctctatttcctttcaaaccaccacaaatttgccactagaagtgaagtacaatgggtggagaaggccgc--aagat-------gaatgga |
19967296 |
T |
|
| Q |
217 |
acaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaaggga |
316 |
Q |
| |
|
| || ||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
19967297 |
agaaatgggtcaacaaattacgaccaaagtttgaatttttatggatcaaaactggaatataccatgctatcacagcttctacttatgaaatcaaaaggaa |
19967396 |
T |
|
| Q |
317 |
tgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagatataaag |
416 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19967397 |
tgatgctttgatccttcaacttgctgatagatggtgttccaagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatataaag |
19967496 |
T |
|
| Q |
417 |
gtttgttttggttactctcttttgggtaattctatttctacccctcttttgaacagtgaac---aagaagcagaagcagaattgattgaagcaagaagaa |
513 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19967497 |
gtttgttttggttactctcttttgggtgattctatttccacccctcttttgaacagtgaacaagaagaagcagaagaagaattgattgaagcaagaagaa |
19967596 |
T |
|
| Q |
514 |
tgtttaataaaactaaagctaaaaaagttactcaaagtgcatggatg |
560 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||| ||| |||||| |
|
|
| T |
19967597 |
tgtttaacaaaacgaaagctaagaaagttactcaaactgcgtggatg |
19967643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 14856545 - 14856422
Alignment:
| Q |
265 |
aaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaa |
364 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14856545 |
aaactggaatatatcatgcaatcacagcttctacttatgaaatcaaaagggatgatgattttattcttgaacttgctaatagatggtgttccaagaccaa |
14856446 |
T |
|
| Q |
365 |
tacttttgttttcccttggggaga |
388 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
14856445 |
tacttttgtgttcccttggggaga |
14856422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 14857015 - 14856869
Alignment:
| Q |
118 |
caccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccagaatggaa |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||| ||||||| | |||| ||||||||| |
|
|
| T |
14857015 |
caccccatttctctatttcctctcaaaccaccacaaatttgccattagaagtgaagtacaatgggtggagaactc---------cacaagaagaatggaa |
14856925 |
T |
|
| Q |
218 |
caactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa |
273 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14856924 |
gaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaattggaa |
14856869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University