View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_18 (Length: 574)
Name: NF19175_high_18
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 37646812 - 37647357
Alignment:
| Q |
13 |
aatatgagaagctatgtggtaatctgtaacatcgtctgggtcatcaatcataatgtatacaagatcaaaccttgaaagtatagctggtggaagagccaca |
112 |
Q |
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| T |
37646812 |
aatatgagaagctatgtggtaatctgtaacatcgtctgggtcatcaatcataatgtatacaagatcaaaccttgaaagtatagccggtggaagagccaca |
37646911 |
T |
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| Q |
113 |
ttgtactgaaacaaagaaagggcaaaaactaaattaggccaagttaaactcaataaggcaattaataaccaggttagcagaacatgttattaccttcagt |
212 |
Q |
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| T |
37646912 |
ttgtactgaaacaaagaaagggcaaaaactaaattaggccaagttaaactcaataaggcaattaataaccaggttagcagaacatgttattaccttcagt |
37647011 |
T |
|
| Q |
213 |
ggtttagacttatcgtaccgtcctccagcagggttggcagcggcaagaatggaagtacgagcattcagtgttgcttgtattcctgcttttgtgatactga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37647012 |
ggtttagacttatcgtaccgtcctccagcagggttggcagcggcaagaatggaagtacgagcattcagtgttgcttgtattcctgcttttgtgatactaa |
37647111 |
T |
|
| Q |
313 |
tagtttgttgttccatagcctcatgaattgcaaccttcaatccaatcaaatatgagatactttccagtccatgaccctcaaatgccagtnnnnnnntaca |
412 |
Q |
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| T |
37647112 |
tagtttgttgttccatagcctcatgaattgcaaccttcaatccaatcaaatatgagatactttccagtccatgaccctcaaatgccagtaaaaaaatgca |
37647211 |
T |
|
| Q |
413 |
tgcctcttacctgatctcttatgtccatcttgtcaaattcatcgatgcagcaaatgccattgtcagcaagcatcaaagcgccggcctgaaaacaagttct |
512 |
Q |
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| T |
37647212 |
tgcctcttacctgatctcttatgtccatcttgtcaaattcatcgatgcagcaaatgccattgtcagcaagcatcaaagcgccggcctgaaaacaagctct |
37647311 |
T |
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| Q |
513 |
tacataagaaaacaagacactagagagcatttatgcagccaaagtg |
558 |
Q |
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| T |
37647312 |
tacataagaaaacaagacactagagagcatttatgcagccaaagtg |
37647357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 50 - 526
Target Start/End: Original strand, 14759986 - 14760463
Alignment:
| Q |
50 |
gggtcatcaatcataatgtatacaagatcaaaccttgaaagtatagctggtggaagagccacattgtactgaaacaaagaaagggcaaaaactaaattag |
149 |
Q |
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| T |
14759986 |
gggtcatcaaccataacatatacaagatcaaacctagaaagtatagctggtggaagagccacattgtactgaaatatggaaagggccaaaactaagttag |
14760085 |
T |
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| Q |
150 |
gccaagttaaactcaata---aggcaattaataaccaggttagcagaacatgttattaccttcagtggtttagacttatcgtaccgtcctccagcagggt |
246 |
Q |
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| T |
14760086 |
gccaagttgtattacatagcaaaacgatcaatagtcggattagcagaacat---attaccttcagtgatttagacttatcatatcttcccccagaaggat |
14760182 |
T |
|
| Q |
247 |
tggcagcggcaagaatggaagtacgagcattcagtgttgcttgtattcctgcttttgtgatactgatagtttgttgttccatagcctcatgaattgcaac |
346 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| |
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| T |
14760183 |
tggcagcggcaagaatggaagtacgggcattaagtgttgcttgtattcctgcttttgtgatactgatagtctgctgctccatagcttcatgaattgcaac |
14760282 |
T |
|
| Q |
347 |
cttcaatccaatcaaatatgagatactttccagtccatgaccctcaaatgccagt-nnnnnnntacatgcctcttacctgatctcttatgtccatcttgt |
445 |
Q |
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||||| | ||||||||||||||||||||| | |||||||||| | | ||| | | | | ||||||||||||||| | |||||||||| | |
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| T |
14760283 |
cttcagtgcaatcaaatatgagatacttttcggtccatgaccatgagttgcaactcaaagaaagatactcctcttacctgatctttggtgtccatcttat |
14760382 |
T |
|
| Q |
446 |
caaattcatcgatgcagcaaatgccattgtcagcaagcatcaaagcgccggcctgaaaacaagttcttacataagaaaaca |
526 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||| |
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| T |
14760383 |
caaattcatcgatgcaggaaatgccattgtcagcaagcatcaaagctccagcctgaaaacaaggtcttaaataagaaaaca |
14760463 |
T |
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