View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_19 (Length: 568)
Name: NF19175_high_19
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 9423563 - 9424099
Alignment:
| Q |
17 |
agtaacattgttcaagctttgattcagtggaatcatccatgaagatgcagggtaattctgcaatggttttgacctattatgttcggattcggataactcg |
116 |
Q |
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| T |
9423563 |
agtaacattgttcaagctttgattcagtggaatcatccatgaagatgcagagtaattctgcaatggttttgacctattatgttcggattcggataactcg |
9423662 |
T |
|
| Q |
117 |
tttcctcgagtataaccgtttgtcagagaagatagacataatgatgattcttcatccccattttctctacaatttttagcatttgcatcaacatttctct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9423663 |
tttcctcgagtataaccgtttgtcagagaagatagacataatgatgattcttcatccccattttctctacaattgttagcatttgcatcaacatttctct |
9423762 |
T |
|
| Q |
217 |
tgtgtttgttaggattaaagatcgaatcgttagattcattttccggaccaaattttaggacaataccattattatttgagcacctgaaaaccgcagcaga |
316 |
Q |
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| T |
9423763 |
tgtggttgttaggattaaagatcgaatcgttagattcattttccggaccaaattttaggacaataccattattatttgagcacctgaaaaccgcagcaga |
9423862 |
T |
|
| Q |
317 |
ttcggtagaagaatcgttgctttcaaaattggaggttgaaattccaccggaagctacaatcatgtggcgatattgagaagctatctgcttgttcctccgt |
416 |
Q |
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| T |
9423863 |
ttcggtagaagaatcgttgctttcaaaatttgaggttgaaattccaccggaagctacaatcatgtggcgatattgagaagctatctgcttgttcctccgt |
9423962 |
T |
|
| Q |
417 |
ctccctgcaccgaaaggaacgtttctcattgttccaccggcagtccaatatctatgacatttccgacaaaaatgccgaggttgactgacattatagttat |
516 |
Q |
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| T |
9423963 |
ctccctgcaccgaaaggaacgtttctcatttttccaccggcagtccaatatctatgacatttccgacaaaaatgccgaggttgactgacattatagttat |
9424062 |
T |
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| Q |
517 |
tgaaataacaaaatttcgtgtcgaaactgttgcatct |
553 |
Q |
| |
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| T |
9424063 |
tgaaataacaaaatttcgtgtcgaaactgttgcatct |
9424099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 9430855 - 9431175
Alignment:
| Q |
11 |
cataggagtaacattgttcaagctttgattcagtggaatcatccatgaagatgcagggtaattctgcaatggttttgacctattatgttcggattcggat |
110 |
Q |
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||||| ||||||||||||| | |||||||||| |||||| |||||||||||||||||||| |||||| ||||| |||||||| |||||||||||| || |
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| T |
9430855 |
catagaagtaacattgttccatctttgattcattggaattatccatgaagatgcagggtagctctgcataggtttagacctattctgttcggattcgaat |
9430954 |
T |
|
| Q |
111 |
aactcgtttcctcgagtataaccgtttgtcagagaagatagacataatgatgattcttcatccccattttctctacaatttttagcatttgcatcaacat |
210 |
Q |
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||||||||||||||||||| ||||||||||| ||| |||| |||||| |||| |||||| || ||||||||||||||||| ||| || |||||||||||| |
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| T |
9430955 |
aactcgtttcctcgagtatgaccgtttgtcacagacgatacacataacgatgtttcttcctctccattttctctacaattattaccacttgcatcaacat |
9431054 |
T |
|
| Q |
211 |
ttctcttgtgtttgttaggattaaagatcgaatcgttagatt------------cattttccggaccaaattttaggacaataccattattatttgagca |
298 |
Q |
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| T |
9431055 |
gtctcctgttgttcataagattaagcattgaacctttggattcatcgagcgaggcattttcccgaccaaattttaggacaataccattatcatttgaaca |
9431154 |
T |
|
| Q |
299 |
cctgaaaaccgcagcagattc |
319 |
Q |
| |
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||| ||||| ||||||||||| |
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| T |
9431155 |
cctaaaaactgcagcagattc |
9431175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 356 - 553
Target Start/End: Original strand, 9431233 - 9431430
Alignment:
| Q |
356 |
aattccaccggaagctacaatcatgtggcgatattgagaagctatctgcttgttcctccgtctccctgcaccgaaaggaacgtttctcattgttccaccg |
455 |
Q |
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||||||| |||| ||||||||||| || ||||||||||||||||| || |||||| |||||||||||||||| | || |||||||||||||||||||||| |
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| T |
9431233 |
aattccatcggacgctacaatcatatgacgatattgagaagctatgtgtttgttcttccgtctccctgcaccaacagcaacgtttctcattgttccaccg |
9431332 |
T |
|
| Q |
456 |
gcagtccaatatctatgacatttccgacaaaaatgccgaggttgactgacattatagttattgaaataacaaaatttcgtgtcgaaactgttgcatct |
553 |
Q |
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| T |
9431333 |
ttggtccaatatctgtgacaactccgacaaaaatgccgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatct |
9431430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 552
Target Start/End: Complemental strand, 33752157 - 33751992
Alignment:
| Q |
387 |
tattgagaagctatctgcttgttcctccgtctccctgcaccgaaaggaacgtttctcattgttccaccggcagtccaatatctatgacatttccgacaaa |
486 |
Q |
| |
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|||||||| |||| ||||| ||| |||| ||||| ||||| | ||||| ||||||||||||||||| ||||||||||| || || || ||| || | |
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| T |
33752157 |
tattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcaga |
33752058 |
T |
|
| Q |
487 |
aatgccgaggttgactgacattatagttattgaaataacaaaatttcgtgtcgaaactgttgcatc |
552 |
Q |
| |
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|||| ||||||||| ||||||||||||| |||||||||||||| || ||||| |||||||||||| |
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| T |
33752057 |
aatgtcgaggttgattgacattatagttgttgaaataacaaaacttggtgtcccaactgttgcatc |
33751992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 2823725 - 2823691
Alignment:
| Q |
435 |
acgtttctcattgttccaccggcagtccaatatct |
469 |
Q |
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| T |
2823725 |
acgtttctcatggttccaccggcagtccaatatct |
2823691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 431 - 538
Target Start/End: Complemental strand, 31771911 - 31771804
Alignment:
| Q |
431 |
aggaacgtttctcattgttccaccggcagtccaatatctatgacatttccgacaaaaatgccgaggttgactgacattatagttattgaaataacaaaat |
530 |
Q |
| |
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|||||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||| || ||||||| || || ||||| ||||||||| |
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| T |
31771911 |
aggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaat |
31771812 |
T |
|
| Q |
531 |
ttcgtgtc |
538 |
Q |
| |
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|| ||||| |
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|
| T |
31771811 |
ttggtgtc |
31771804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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