View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_20 (Length: 566)
Name: NF19175_high_20
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 2578460 - 2578990
Alignment:
| Q |
18 |
atctgttgtccatgcataggtaacttaggcataatgttgcagttctgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578460 |
atctgttgtccatgcataggtaacttaggcataatgttgcagttttgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgc |
2578559 |
T |
|
| Q |
118 |
attctctataaaattggcgattggaatgagcataaagagtgtcttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2578560 |
attctctataaaattggcgattggaatgagcataaagagtgtcttgatatgcatcaatgtgacacttataataaaccgcttgatcagcacttgtcattag |
2578659 |
T |
|
| Q |
218 |
tgctactgcttggtgcttttgtggacctgctgtattgcgaaaacccatgtctcttgctatgaaattccttccaaacacagctatttgcaccccaaagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578660 |
tgctactgcttggtgcttttgtggacctgctgtattgcgaaaacccatgtctcttgctatgaaattccttccaaacacagctatttgcaccccaaagaaa |
2578759 |
T |
|
| Q |
318 |
acaaaaatgaaaagattcccaagttattcaaaactgttgtttccataagatctctaaaatagtctcaaaagcacttataccaatagatattctccaagcc |
417 |
Q |
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| T |
2578760 |
acaaaaatgaaaagattcccaagttattcaaaactgttgtttccataagatctctaaaatagtctcaaaagcacttataccaatagatattctccaagcc |
2578859 |
T |
|
| Q |
418 |
gggtcttactagccagtgtccccggtcactgattaatgactcctctaatgactcctcaaatagaaattttatctagaataaagtaataattacactagcc |
517 |
Q |
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| T |
2578860 |
gggtcttactacccagtgtctccggtcactgat------------taatgactcctcaaatagaaattttatcttgaat--agtaataattacactaact |
2578945 |
T |
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| Q |
518 |
ttttat-aaaaacttatatgtttcagttgcttaatctctgctcct |
561 |
Q |
| |
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|||||| |||||||||| ||||| |||||||||||| |||||||| |
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| T |
2578946 |
ttttataaaaaacttatctgttttagttgcttaatcactgctcct |
2578990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 33950200 - 33950335
Alignment:
| Q |
216 |
agtgctactgcttggtgcttttgtggacctgctgtattgcgaaaacccatgtctcttgctatgaaattccttccaaacacagctatttgcaccccaaaga |
315 |
Q |
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|||| ||||| ||||||| |||| |||| | ||||||||| ||||| ||||||| | |||||||||||||||||||||||| | ||| ||||| |||| |
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| T |
33950200 |
agtgttactgtttggtgcatttgcggac-tactgtattgcaaaaactcatgtctgtagctatgaaattccttccaaacacaacaatt--aacccccaaga |
33950296 |
T |
|
| Q |
316 |
aaacaaaaatgaaaagattcccaagttattcaaaactgtt |
355 |
Q |
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| T |
33950297 |
aaacaaaaatgaaaaaattcacaagtta-tcaaaactgtt |
33950335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 50 - 299
Target Start/End: Complemental strand, 16605797 - 16605548
Alignment:
| Q |
50 |
aatgttgcagttctgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattggcgattggaatgagca |
149 |
Q |
| |
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|||||||||||| || | || || ||||| ||||| ||||||||||| |||||||| || ||||||||||| | || ||||||||||| || || || |
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| T |
16605797 |
aatgttgcagttttgtaatacgacggctgagtttccgaaaatgaaatcgactgttccgtatatgttgcattcgcggtagaattggcgatttgagtgtgcg |
16605698 |
T |
|
| Q |
150 |
taaagagtgtcttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttggtgcttttgtggacctgctg |
249 |
Q |
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|| || ||||||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
16605697 |
tagagtgtgtcttgatatgcatccatggaacatttgtagaaaactgcttgatctgcacttgtcattagtgctactgcttggtgtttttgtggaccggctg |
16605598 |
T |
|
| Q |
250 |
tattgcgaaaacccatgtctcttgctatgaaattccttccaaacacagct |
299 |
Q |
| |
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| || ||| || |||||||| || |||||||| || |||||||||||| |
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| T |
16605597 |
tgttcttaaagcctatgtctctggcaatgaaatttctcccaaacacagct |
16605548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 8380745 - 8380783
Alignment:
| Q |
68 |
cacaacagctgaatttccaaaaatgaaatcaactgttcc |
106 |
Q |
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| T |
8380745 |
cacaacagctgaattaccaaagatgaaatcaactgttcc |
8380783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 9833103 - 9833054
Alignment:
| Q |
357 |
tttccataagatctctaaaatagtctcaaaagcacttataccaatagata |
406 |
Q |
| |
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|||||||||||||||| ||||||||||| ||| ||||| |||||||||| |
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| T |
9833103 |
tttccataagatctctcaaatagtctcataagtacttacgccaatagata |
9833054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 8767085 - 8767036
Alignment:
| Q |
84 |
ccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
133 |
Q |
| |
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||||| |||||||||||||| ||||| ||||| |||||||| |||||||| |
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| T |
8767085 |
ccaaagatgaaatcaactgtgccatagatgttacattctctgtaaaattg |
8767036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 44474450 - 44474514
Alignment:
| Q |
69 |
acaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
133 |
Q |
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|||||||| | ||||||||| ||||| |||||||||||||| |||| ||||| | ||||||||| |
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| T |
44474450 |
acaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattg |
44474514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 44488636 - 44488688
Alignment:
| Q |
81 |
tttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
133 |
Q |
| |
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|||||||| || ||||| | |||||||||||||| ||||||| |||||||||| |
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| T |
44488636 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattg |
44488688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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