View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_28 (Length: 503)
Name: NF19175_high_28
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 48254644 - 48254163
Alignment:
| Q |
18 |
agaacttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattg |
117 |
Q |
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| T |
48254644 |
agaacttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattg |
48254545 |
T |
|
| Q |
118 |
aaacaaaccagagaaagtctctcagatgcttctgtcatatatgtcgatacctacaccgttctgttggagcttttccggcatcctacttctcatggttcaa |
217 |
Q |
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| T |
48254544 |
aaacaaaccagagaaagtatctcagatgcttctgtcatatatgtcgatacctacaccgttctgttggagcttttccggcatcctacttctcatggttcaa |
48254445 |
T |
|
| Q |
218 |
acacttatctcttggcttgttttaaaagaacattgttaatcgtaatgatcccttaaatgnnnnnnngtttcttacatgaaacaggtcttcaatatggtac |
317 |
Q |
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| T |
48254444 |
acacttatcttttggcttgttttaaaagaacattgttaatcgtaatgatcccttaaatgtttttttgtttgttacatgaaacaggtcttcaatatggtac |
48254345 |
T |
|
| Q |
318 |
aaaagcatgttgtggatatggtggaggtgaatacaacttcgatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaaca |
417 |
Q |
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| T |
48254344 |
aaaagcatgttgtggatatggtggaggtgaatacaacttcaatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaaca |
48254245 |
T |
|
| Q |
418 |
gcatgtgatgacccttacaactatgtgagttgggatgggattcatgctacagaagctgcaagcaagcttataacctatgcta |
499 |
Q |
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| T |
48254244 |
gcatgtgatgacccttacaactatgtgagttgggatgggattcatgccacagaagctgcaagcaagcttataacctatgcta |
48254163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 10499596 - 10499723
Alignment:
| Q |
22 |
cttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattgaaac |
121 |
Q |
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|||||||||| |||||| ||| | || ||| ||||||||| || |||| |||||||| |||| || || |||||| ||||||||||| |||||| | |
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| T |
10499596 |
cttcctcatactagttctgacttagatgaacatggatgcataattacttataacaatgctgtagatgattacaacaaattgttgaaagagacattgactc |
10499695 |
T |
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| Q |
122 |
aaaccagagaaagtctctcagatgcttc |
149 |
Q |
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|||| ||| ||||| | ||||||||||| |
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| T |
10499696 |
aaactagaaaaagtttatcagatgcttc |
10499723 |
T |
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