View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_31 (Length: 496)
Name: NF19175_high_31
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 39878001 - 39877533
Alignment:
| Q |
19 |
agagctactaaatgtgtatgtttttatttatttatatattgaaactttaaaagtttacannnnnnnacatggtcattgtttatgattaaaccttgaaatg |
118 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39878001 |
agagctactgaatgtgtatgtttttatttatttatatattgaaactttaaaagtttacatttttttacatggtcattgtttatgattaaaccttgaaatg |
39877902 |
T |
|
| Q |
119 |
tctattttgaatattttcacgggtattatttgaataatgtcctagaaatttttcaaagctaaaggttgaagcttttatcttttcttcccaggattttgag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877901 |
tctattttgaatattttcacgggtattatttgaataatgtcctagaaatttttcaaagctaaaggttgaagcttttatcttttcttcccaggattttgag |
39877802 |
T |
|
| Q |
219 |
gggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877801 |
gggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaa |
39877702 |
T |
|
| Q |
319 |
ggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39877701 |
ggacgcttcaattttaaatggctcacatcattcgataaaaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgatgatg |
39877602 |
T |
|
| Q |
419 |
ttcctttatcagcaaggttgtctaagaagggataccatcattaacaaactccagattgtcaggcctttg |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39877601 |
ttcctttatcagcaaggttgtctaagaagggataccatcattaacaaactccagattgtcaggcctttg |
39877533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 85 - 412
Target Start/End: Complemental strand, 39423181 - 39422853
Alignment:
| Q |
85 |
acatggtcattgttt-atgattaaaccttgaaatgtctattttgaatattttcacgggtattatttgaataatgtcctagaaatttttcaaagctaaagg |
183 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||| | |
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|
| T |
39423181 |
acatggtcattgttttatgattaaaacttgaaatgtctattttgagtattttcatgggtattatttgatcaatgtcctagaaatttttcaaatctaaaag |
39423082 |
T |
|
| Q |
184 |
ttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggctt |
283 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
39423081 |
ttgaagcttttaacctttgttcccaggattttgaggtgtttgtgttatagctgagagtttaaagttttctatagttcaatcatggatgttgttgaggctt |
39422982 |
T |
|
| Q |
284 |
ctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtga |
383 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| || | |
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| T |
39422981 |
ctgataacccaaatttatgtgttggtgatgatgaaggacacttcaattttaaatggcacacatcattcgataaaaaaacatcgcattcagattcttgtaa |
39422882 |
T |
|
| Q |
384 |
agactatgaatctgaagatgatgatgatg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
39422881 |
agactatgaatctgaagatgatgatgatg |
39422853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 142 - 447
Target Start/End: Complemental strand, 39416970 - 39416668
Alignment:
| Q |
142 |
tattatttgaataatgtcctagaaatttttca-aagctaaaggttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagag |
240 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| || | ||||| | ||||| |
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|
| T |
39416970 |
tattattttattaaagtcctagaaatttttcactccctaaaagttgaaggttttgtcttttcttcacaggattttgaggtgtaaatttaatatccgagag |
39416871 |
T |
|
| Q |
241 |
tttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggc |
340 |
Q |
| |
|
|||| || ||||||||||| ||| ||||||||||| ||||||||| |||| |||| ||| ||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
39416870 |
tttacag-tttctatagttcaatgatggatgttgttgaggcttctgataagccaattttttgtgttggtgatgatgaagagcacttcaattttaaatggc |
39416772 |
T |
|
| Q |
341 |
tcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggttgtc |
440 |
Q |
| |
|
| ||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||| | |
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|
| T |
39416771 |
ttgcatcattcgataaaaaaacatcgcattcagcttcacgtgaagactttgaatctgatgatgatgatgatg---atgttcctttgtcagcaaggtttgc |
39416675 |
T |
|
| Q |
441 |
taagaag |
447 |
Q |
| |
|
||||||| |
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|
| T |
39416674 |
taagaag |
39416668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 141 - 408
Target Start/End: Complemental strand, 39474851 - 39474588
Alignment:
| Q |
141 |
gtattatttgaataatgtcctagaaatttttcaaagctaaaggttgaagcttttatctttt-cttcccaggattttgaggggtttgtgtaatagctgaga |
239 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || ||||| | |||||| |||| ||||||||||||| || | ||| | ||| ||| ||| |
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|
| T |
39474851 |
gtattatttgattaatgtcctggaaatttttcaaagcttaaagttgacgtttttatttttttcttcccaggatttcgacgtgttcat-taagagccaaga |
39474753 |
T |
|
| Q |
240 |
gtttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatgg |
339 |
Q |
| |
|
||||| ||||| |||||||| ||| |||||| ||| |||||||| |||| |||||||| |||||||| |||||||||| || || |||||||||||| |
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|
| T |
39474752 |
gtttacagttt-ctatagttcaataatggatattg---aggcttctgataagccaaatttttgtgttggagatgatgaagaacatttaaattttaaatgg |
39474657 |
T |
|
| Q |
340 |
ctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgat |
408 |
Q |
| |
|
|| |||||||||||| ||| ||||||| || |||| |||||| ||||||||||||||||||| |
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|
| T |
39474656 |
ctaacatcattcgataaaagtacattgcattcaccttttcgtcaagactttgaatctgaagatgatgat |
39474588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 249 - 412
Target Start/End: Complemental strand, 39488540 - 39488380
Alignment:
| Q |
249 |
tttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatca |
348 |
Q |
| |
|
|||||||| |||||| |||||| ||| | ||||||||||| | ||| || |||| |||||||||||||| || ||| ||||||||||||||| ||||| |
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|
| T |
39488540 |
tttctatacttgaatgatggattttg---aagcttctaataagctaaaattttgtggtggtgatgatgaagaacacttaaattttaaatggctcgcatca |
39488444 |
T |
|
| Q |
349 |
ttcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
412 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39488443 |
tttgataaaaaaacatcgcattcagcttctcgtgaagactatgaatctgaagatgatgatgatg |
39488380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 169 - 354
Target Start/End: Original strand, 39135787 - 39135970
Alignment:
| Q |
169 |
tttcaaagctaaaggttgaa-gcttttatctttt-cttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcat |
266 |
Q |
| |
|
|||||||||| ||||||||| | |||||| |||| ||||||||||| |||||| ||| |||||| |||||||| ||| ||||| |||||||||||| || |
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|
| T |
39135787 |
tttcaaagctgaaggttgaaagtttttatttttttcttcccaggatgttgaggtgttcttgtaattgctgagaggttatagttt-ctatagttgaatgat |
39135885 |
T |
|
| Q |
267 |
ggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatcattcgat |
354 |
Q |
| |
|
|||| |||| |||||| || |||| ||||| || |||||||||||||| ||| ||| |||||||||||||| ||||||||||| |
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|
| T |
39135886 |
ggatattgttgaggctactcataagccaaagttttgtgttggtgatgaagaata---cttaaattttaaatggcttgcatcattcgat |
39135970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 412
Target Start/End: Original strand, 39457627 - 39457872
Alignment:
| Q |
167 |
tttttcaaagctaaaggttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcat |
266 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| | | | |||| ||||||||||||||| || |
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|
| T |
39457627 |
tttttcaaagctaaaagttgaagcttttatcttttcttcccaggattttgaggtgttcatgtaataccccaaaagttaacaatttctatagttgaatgat |
39457726 |
T |
|
| Q |
267 |
ggatgttgtcgaggcttctaataacccaaatttatgtgt---tggtgatgatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnnca |
363 |
Q |
| |
|
|| | || ||||||||| |||| |||| || ||||| || ||||||||||| | ||||||||||||||||| ||||||| ||| || |
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|
| T |
39457727 |
gggtttt---gaggcttctgataagtcaaagttttgtgttcgtgatgatgatgaagaaactttcaattttaaatggcttgcatcatttgataaaaaaaca |
39457823 |
T |
|
| Q |
364 |
tcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
412 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
39457824 |
tcgcattcatcttccactgaagactttgaatctgaaggtgatggtgatg |
39457872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 437
Target Start/End: Original strand, 39151416 - 39151598
Alignment:
| Q |
249 |
tttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatgatgaaggacgcttcaattttaaatggctcacatca |
348 |
Q |
| |
|
||||| ||||||||| |||||| ||| | ||||||||||| | ||| || ||||| ||||||||||||||||||||||| |||||| || | |||| |
|
|
| T |
39151416 |
tttctgtagttgaatgatggattttg---aagcttctaataagctaaaattttgtgtaggtgatgatgaaggacgcttcaactttaaacggattgcatcg |
39151512 |
T |
|
| Q |
349 |
ttcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggtt |
437 |
Q |
| |
|
| ||| |||| ||||||| |||||| ||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||| |
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|
| T |
39151513 |
tgcgagataaaaacatctcattcagcttctcgcgaagactttgaatctgaagatgaagatgatg---atgttcctttgtcagcaaggtt |
39151598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 39469846 - 39469893
Alignment:
| Q |
303 |
tgttggtgatgatgaaggacgcttcaattttaaatggctcacatcatt |
350 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
39469846 |
tgttggtgatgatgaagaactcttgaattttaaatggctcacatcatt |
39469893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 142 - 313
Target Start/End: Original strand, 19806145 - 19806312
Alignment:
| Q |
142 |
tattatttgaataatgtcctagaaatttttcaaagctaaa-ggttgaagcttttatcttttcttcccaggattttgaggggtttgtgtaatagctgagag |
240 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||| |||| ||||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
19806145 |
tattatttgattaatgtcctggaattttttcaaagttaaaaggttgaat-ttttattttttcttcccaggattttgaggtgttcttgtaattgctgagaa |
19806243 |
T |
|
| Q |
241 |
tttaaagttttctatagttgaatcatggatgttgtcgaggcttctaataacccaaatttatgtgttggtgatg |
313 |
Q |
| |
|
||| || ||||||||||||| ||||||||||| ||||||| | |||| ||||| || ||||||||||||| |
|
|
| T |
19806244 |
gttacag-tttctatagttga---atggatgttgttgaggcttttgataagccaaagttctgtgttggtgatg |
19806312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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