View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_32 (Length: 491)
Name: NF19175_high_32
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 40638472 - 40638004
Alignment:
| Q |
7 |
agagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggaggagtagaacaatttgaatttgaaacaatagcattatcaa |
106 |
Q |
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| T |
40638472 |
agagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggaggagtagaacaatttgaatttgaaacaatagcattatcaa |
40638373 |
T |
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| Q |
107 |
cagattcaacactaacactaactctttgttcatcttctagggtgaaattactatttctgttagactctgatttaactgaatcttgtttaggtttagttgg |
206 |
Q |
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| T |
40638372 |
cagattcaacactaacactaactctttgttcatcttctagggtgaaattactatttctgttagactctgatttaactgaatcttgtttaggtttagttgg |
40638273 |
T |
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| Q |
207 |
nnnnnnnctacggaagaaagcccatttgggccaaacgggtcgacaacggcatgggttgggctttttaatccaccagtggtgtgtgggagtggtggaggat |
306 |
Q |
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| T |
40638272 |
tttttttctacggaagaaagcccatttgggccaaacgagtcgacaacggcatgggttgggctttttaatccaccagtggtgtgtgggagtggtggaggat |
40638173 |
T |
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| Q |
307 |
ttggatgagctacgtttggctctgacttgacccatgcaagtgactttaggggaagaaggttcttgtgtagtttcaatggnnnnnnngttacggagaacga |
406 |
Q |
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| T |
40638172 |
ttggatgagctacgtttggctctgacttgacccatgcaagtgactttaggggaagaaggttcttgtgtagtttcaatggtttttttgttacggagaacga |
40638073 |
T |
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| Q |
407 |
acatggggcttgaccttgaccttctactacttctacttcctgcattggttcttaagaatctcattaatg |
475 |
Q |
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| T |
40638072 |
acatggggcttgaccttgaccttctactacttctacttcctgcattggttcttaagaatctcattaatg |
40638004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 28675726 - 28675765
Alignment:
| Q |
331 |
acttgacccatgcaagtgactttaggggaagaaggttctt |
370 |
Q |
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| T |
28675726 |
acttgacccatgcaagtgactttaggggaagaaggttctt |
28675765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 27557162 - 27557100
Alignment:
| Q |
7 |
agagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggagga |
69 |
Q |
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| T |
27557162 |
agagatgaagatttgtatggtgcagatctacaccgcgttaattggaaagcgtttttcggagga |
27557100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 45535941 - 45535879
Alignment:
| Q |
7 |
agagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggagga |
69 |
Q |
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| T |
45535941 |
agagatgaagatttgtatggtgcagatctacaccgcgttaattggaaagcgtttttcggagga |
45535879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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