View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_35 (Length: 481)
Name: NF19175_high_35
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_35 |
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| [»] scaffold0940 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 43802767 - 43802310
Alignment:
| Q |
19 |
agagcaagcgccattcttcaggtcctctacgctcacattcgttctccttcctcaaacgacgtcgttttcggcaaggtttttctctattccccttttcgca |
118 |
Q |
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| T |
43802767 |
agagcaagcgccattcttcaggtcctctacgctcaccttcgttctccttcctcaaacgacgtcgttttcggcaaggtttttctctattccccttt-cgca |
43802669 |
T |
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| Q |
119 |
cttttattcagttagctttgcaattttggaacctaaaccctattaataaatggttagtgtaatttaattgaattggttatgtaatttttactgttattgg |
218 |
Q |
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| T |
43802668 |
cttttattcagttagctttgcaattttggaacctaaaccctattaataaatgcttagtgtaatttaattgaattggttatgtaatttttactgttattgg |
43802569 |
T |
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| Q |
219 |
tttgtgatgatttcaggagacatctatagagttggtggtgattgatgaggaggggaatgtacaaaccgtttgtgatcagcctgtttttggtatcattaaa |
318 |
Q |
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| T |
43802568 |
tttgtgatgatttcaggagacatctatagagttggtggtgattgatgaggaggggaatgtacaaaccgtttgtgatcagcctgtttttggtatcattaaa |
43802469 |
T |
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| Q |
319 |
gatcttgctgtattgccatggaatgacaaattttgcgcccgtcgtccacaggtgc------gtgtgtgtgatggcaattagtaaatttgattgatttata |
412 |
Q |
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| T |
43802468 |
gatcttgctgtattgccatggaatgacaaattttgcacccgtcgtccacaggtgcgcgcgtgtgtgtgtgatggcaattagtaaatttgattgatttata |
43802369 |
T |
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| Q |
413 |
ttttctgggtcgccattagtagggtgaggtttttcaatatatatgctgtttcgcctatg |
471 |
Q |
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| T |
43802368 |
ttttctgggtcgccattagtagggtgaggtttttcaatatatatgctgtttcgcctatg |
43802310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0940 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0940
Description:
Target: scaffold0940; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 2943 - 2838
Alignment:
| Q |
140 |
aattttggaacctaaaccctattaataaatggttagtgtaatttaattgaattggttatgtaattttt-actgttattggtttgtgatgatttcaggaga |
238 |
Q |
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||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
2943 |
aattttggaacataa-ccctagtaatacatggttagtgtaatttaattgaattggttttgtagttttttacttttattggtttgtgatgatttcaggaga |
2845 |
T |
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| Q |
239 |
catctat |
245 |
Q |
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| T |
2844 |
catctat |
2838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0940; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 2406 - 2295
Alignment:
| Q |
140 |
aattttggaacctaaaccctattaataaatggttagtgtaatttaattgaattggttatgtaatttttac-tgttattggtttgtgatgatttcaggaga |
238 |
Q |
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| T |
2406 |
aattttggaacataa-ccctagtaatacatggttagtgtaatttaattgaattgattttgtagttgttactttttattggtttgttataatttccagaga |
2308 |
T |
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| Q |
239 |
catctatagagtt |
251 |
Q |
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||| ||| ||||| |
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| T |
2307 |
catttattgagtt |
2295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0940; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 372
Target Start/End: Complemental strand, 2293 - 2229
Alignment:
| Q |
308 |
gtatcattaaagatcttgctgtattgccatggaatgacaaattttgcgcccgtcgtccacaggtg |
372 |
Q |
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| T |
2293 |
gtatcattacagatcttgccgtattgccagggaatgacaaatttccagatcgtcgtccacaggtg |
2229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 10291250 - 10291308
Alignment:
| Q |
286 |
gtttgtgatcagcctgtttttggtatcattaaagatcttgctgtattgccatggaatga |
344 |
Q |
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| T |
10291250 |
gtttgtgatcagcctgtttttggcatcatcaaagatcttgctttgttgccgtgtaatga |
10291308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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