View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_36 (Length: 479)
Name: NF19175_high_36
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 463
Target Start/End: Complemental strand, 42918040 - 42917587
Alignment:
| Q |
10 |
agcagcacagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattg |
109 |
Q |
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| T |
42918040 |
agcagcaaagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattg |
42917941 |
T |
|
| Q |
110 |
catcacatgaaaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaag |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917940 |
catcacatgacaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaag |
42917841 |
T |
|
| Q |
210 |
gcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917840 |
gcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctg |
42917741 |
T |
|
| Q |
310 |
gaccccaagctcatcatcgctgaaatcagttaacaatgtagacnnnnnnnggccggttaacctagaaaactaatgaaaatcagagcaaaaaacaatcatg |
409 |
Q |
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||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
42917740 |
gaccccaagctcatcatcgctgaaaccagttaacaatgtatacaaaaaaaggtcggttaacctagaaaactaatgaaaatcagagaaaaatacaatcatg |
42917641 |
T |
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| Q |
410 |
aagcagcaatttgataccgcataatggacttgtaaaccctaccctggaaacatg |
463 |
Q |
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| T |
42917640 |
aagcagcaatttgatacagcataatggacttgtaaaccctaccctggaaacatg |
42917587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 33965175 - 33965316
Alignment:
| Q |
193 |
aggaagcattacccaaggcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgta |
292 |
Q |
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||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | ||||| |||||| |
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| T |
33965175 |
aggaagcattacccagggcaacgcaccaatatgatcttcatgaccatgtgttataacaagcgcttcaattttgtggctccattttcttataaacgttgta |
33965274 |
T |
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| Q |
293 |
tcaggtattatcttctggaccccaagctcatcatcgctgaaa |
334 |
Q |
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|||||||| ||||| || || || || ||||||| ||||||| |
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| T |
33965275 |
tcaggtataatcttttgtactccgaggtcatcatagctgaaa |
33965316 |
T |
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