View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_high_37 (Length: 474)

Name: NF19175_high_37
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_high_37
NF19175_high_37
[»] chr5 (6 HSPs)
chr5 (4-455)||(40644084-40644535)
chr5 (13-71)||(1657964-1658022)
chr5 (16-71)||(14245123-14245178)
chr5 (24-71)||(34980972-34981019)
chr5 (3-71)||(10650464-10650533)
chr5 (3-59)||(25627770-25627826)
[»] chr1 (8 HSPs)
chr1 (3-74)||(27739084-27739155)
chr1 (16-81)||(525127-525190)
chr1 (7-64)||(18373834-18373891)
chr1 (3-55)||(25541939-25541990)
chr1 (13-59)||(8529950-8529996)
chr1 (13-71)||(41498555-41498613)
chr1 (17-70)||(41676436-41676489)
chr1 (3-62)||(46218055-46218112)
[»] chr2 (4 HSPs)
chr2 (3-72)||(14196810-14196879)
chr2 (1-67)||(21662347-21662413)
chr2 (13-71)||(31795804-31795863)
chr2 (3-72)||(18811363-18811432)
[»] chr4 (10 HSPs)
chr4 (14-69)||(11842346-11842401)
chr4 (5-76)||(45904580-45904650)
chr4 (12-75)||(23813132-23813195)
chr4 (3-71)||(47694384-47694453)
chr4 (15-67)||(21694929-21694981)
chr4 (3-43)||(42201217-42201257)
chr4 (5-61)||(45911325-45911380)
chr4 (3-71)||(49936194-49936262)
chr4 (16-67)||(55080733-55080784)
chr4 (24-69)||(22186881-22186926)
[»] chr8 (10 HSPs)
chr8 (13-78)||(22591558-22591623)
chr8 (3-72)||(38198189-38198258)
chr8 (13-71)||(1281294-1281352)
chr8 (4-60)||(34552608-34552664)
chr8 (13-48)||(29358398-29358433)
chr8 (5-43)||(42919871-42919909)
chr8 (17-70)||(10028278-10028331)
chr8 (12-72)||(26167791-26167851)
chr8 (3-43)||(36166230-36166270)
chr8 (3-71)||(44114214-44114282)
[»] chr7 (12 HSPs)
chr7 (3-64)||(42283123-42283184)
chr7 (5-54)||(44040810-44040859)
chr7 (5-60)||(33224136-33224191)
chr7 (16-78)||(48094047-48094109)
chr7 (38-75)||(1013955-1013992)
chr7 (13-71)||(24970200-24970258)
chr7 (13-67)||(30592292-30592346)
chr7 (13-59)||(40196579-40196625)
chr7 (13-62)||(2087783-2087832)
chr7 (3-55)||(22599904-22599957)
chr7 (18-71)||(48881593-48881646)
chr7 (12-48)||(47391006-47391042)
[»] chr3 (5 HSPs)
chr3 (25-77)||(1816051-1816103)
chr3 (24-74)||(25179926-25179976)
chr3 (24-71)||(34641152-34641199)
chr3 (4-75)||(49815453-49815524)
chr3 (6-48)||(45663287-45663329)
[»] chr6 (4 HSPs)
chr6 (12-71)||(10818366-10818425)
chr6 (12-71)||(30849949-30850008)
chr6 (3-65)||(16509322-16509384)
chr6 (13-59)||(19278081-19278127)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-71)||(242367-242425)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 4 - 455
Target Start/End: Original strand, 40644084 - 40644535
Alignment:
Q  4 cttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaatccatcgagaaataccataaaaaaccaa 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40644084 cttaattgattttaaaaaagattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaatccatcaagaaataccataaaaaaccaa 40644183  T
Q  104 acatacaagttaatatatgaatccaagcagtaaacaaaatagacagaggaaataaaaaagtcaataaggaaagcatatatattcactccttgttgaaaac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40644184 acatacaagttaatatatgaatccaagcagtaaacaaaatagacagaggaaataaaaaagtcaataaggaaagcatatatatacactccttgttgaaaac 40644283  T
Q  204 tataagcaaatgccttggttatgaacttatgatgtatcaggaactgcagaatatatcctcgnnnnnnnggttcaagtcaccattgtcaacatcgaatttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  40644284 tataagcaaatgccttggttatgaacttatgatgtatcaggaattgcagaatatatcctcgaaaaaaaggttcaagtcaccattgtcaacatcgaatttc 40644383  T
Q  304 aacaatttctccatagcgtcctgcatgaagcatgtacatgtgagtaaatgatatccaaaatgtaacaagtatctttaatttgacttttgaaactgaaatg 403  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40644384 aacaatttctccatagcgtcctgcatgaaacatgtgtatgtgagtaaatgatatccaaaatgtaacaagtatctttaatttgacttttgaaactgaaatg 40644483  T
Q  404 ataccttgtattcatcatcttgagctgagatgttctcattgcataacctctc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40644484 ataccttgtattcatcatcttgagctgagatgttctcattgcataacctctc 40644535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 1657964 - 1658022
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||||||||| |||||||||||||||||||| ||||  |||||||||  ||||||||||    
T  1657964 ttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcc 1658022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 14245178 - 14245123
Alignment:
Q  16 taaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||| |||| | ||||||||||||| |||| |||||||||| |||||||||||    
T  14245178 taaaaaacatttcacagtgtccgtaatttaaaaaagaaaagtaaatcctcccctcc 14245123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 34980972 - 34981019
Alignment:
Q  24 attttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||||||| ||||| ||||| |||| ||||||||||||||||||||||    
T  34980972 attttataatgtccataatttaaaaaagaaaagtaagtcctcccctcc 34981019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 10650533 - 10650464
Alignment:
Q  3 acttaattgatttta-aaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||||||| |||||| ||||| |||| ||||||||||||||| ||||   |||||||| |||||||||||    
T  10650533 acttaatttattttagaaaaacatttcatagtgtccgtaatttaaaaataaaaagtaaatcctcccctcc 10650464  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 25627826 - 25627770
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaa 59  Q
    |||||||||||||||||||  |||||||||| | | ||||| |||||||||| ||||    
T  25627826 acttaattgattttaaaaatcattttatagtattcataatttaaaagagaaaggtaa 25627770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 27739155 - 27739084
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaa 74  Q
    |||||||||||||||||||| |||||||||| |   ||||| |||||||||||||||| |||||||||||||    
T  27739155 acttaattgattttaaaaaacattttatagtatttataatttaaaagagaaaagtaagccctcccctccaaa 27739084  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 525190 - 525127
Alignment:
Q  16 taaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaatccatc 81  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  525190 taaaaattattttata-tgtccgtaatttaaaaaagaaaagtaa-tcctcccctcctaaatccatc 525127  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 18373834 - 18373891
Alignment:
Q  7 aattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcct 64  Q
    |||||| ||||||||| |||||||| ||||||||||  | ||||||||||||||||||    
T  18373834 aattgactttaaaaaacattttatactgtccgtaatatataagagaaaagtaagtcct 18373891  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 25541990 - 25541939
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaa 55  Q
    ||||||||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  25541990 acttaattgattttaaaaa-tattttatagtgtctataatttaaaagagaaaa 25541939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 8529950 - 8529996
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaa 59  Q
    ||||||||||||||| ||||||||||||||| ||||  |||||||||    
T  8529950 ttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaagtaa 8529996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 41498555 - 41498613
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||| |||| |||| ||||||||||||||| ||||  ||||||||| |||||||||||    
T  41498555 ttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaatcctcccctcc 41498613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 41676436 - 41676489
Alignment:
Q  17 aaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctc 70  Q
    |||||| |||||||||||||||||||| ||||  |||||||||  |||||||||    
T  41676436 aaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctc 41676489  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 46218112 - 46218055
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtc 62  Q
    |||||||||||||  |||||||||||||||| || |||||| | || |||||||||||||    
T  46218112 acttaattgattt--aaaaatattttatagtctctgtaatttataaaagaaaagtaagtc 46218055  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 14196810 - 14196879
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcca 72  Q
    ||||| || ||||||||||| |||||||||||| ||||||| |||| ||||||||||| |||||||||||    
T  14196810 acttagtttattttaaaaaacattttatagtgttcgtaatttaaaaaagaaaagtaagccctcccctcca 14196879  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21662347 - 21662413
Alignment:
Q  1 aaacttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctccc 67  Q
    |||||||||||||||||||||| |||||| ||||||  || || |||||||||||||||| ||||||    
T  21662347 aaacttaattgattttaaaaaacattttacagtgtctatactttaaaagagaaaagtaaggcctccc 21662413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 31795863 - 31795804
Alignment:
Q  13 ttttaaaaaatatttt-atagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||||||  |||| ||||||||||||||| ||||  |||||||||||||||||||||    
T  31795863 ttttaaaaaaacttttcatagtgtccgtaatttaaaaacgaaaagtaagtcctcccctcc 31795804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 18811432 - 18811363
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcca 72  Q
    |||||||| ||||||||||| | ||||||||  | |||||| |||| ||||||||||||| | |||||||    
T  18811432 acttaatttattttaaaaaacactttatagttactgtaatttaaaaaagaaaagtaagtcattccctcca 18811363  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11842401 - 11842346
Alignment:
Q  14 tttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccct 69  Q
    ||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||    
T  11842401 tttaaaaaatattttatagtgtctgtaatttgaaaaagaaaagtaagtcctcccct 11842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 45904650 - 45904580
Alignment:
Q  5 ttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaat 76  Q
    ||||||||||||||||  ||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||    
T  45904650 ttaattgattttaaaag-tattttatagtatccgtaatttaaaagagaaatataagtcctcccctacaaaat 45904580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 23813195 - 23813132
Alignment:
Q  12 attttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaa 75  Q
    ||||| ||||| |||||||||||||||||||| || |  ||||||||||||||| |||||||||    
T  23813195 attttcaaaaacattttatagtgtccgtaatttaacaatgaaaagtaagtcctctcctccaaaa 23813132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 47694453 - 47694384
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagag-aaaagtaagtcctcccctcc 71  Q
    |||| |||||||||| |||  |||| ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  47694453 acttgattgattttagaaagcatttcatagtgtccgtaatttaaaagagaaaaagtaagccctcccctcc 47694384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 21694981 - 21694929
Alignment:
Q  15 ttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctccc 67  Q
    |||||||  |||||||||||||||||||| |||| ||||||||||| ||||||    
T  21694981 ttaaaaaccattttatagtgtccgtaatttaaaaaagaaaagtaagccctccc 21694929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 42201217 - 42201257
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaatt 43  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  42201217 acttaatttattttaaaaaatattttatagtgtccataatt 42201257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 45911380 - 45911325
Alignment:
Q  5 ttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagt 61  Q
    |||||| |||||||||| ||||||||||| ||||||||| |||| ||||||||||||    
T  45911380 ttaattaattttaaaaa-tattttatagtatccgtaatttaaaaaagaaaagtaagt 45911325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 49936262 - 49936194
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||||||||| |||||| ||  |||||||||||||||| |||| ||||||| |||  |||||||||    
T  49936262 acttaattgatttaaaaaaacatcatatagtgtccgtaatttaaaaaagaaaagcaagcactcccctcc 49936194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 55080733 - 55080784
Alignment:
Q  16 taaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctccc 67  Q
    |||||| ||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  55080733 taaaaattattttataatgttcgtaatttaaaaaagaaaagtaagtcctccc 55080784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 22186881 - 22186926
Alignment:
Q  24 attttatagtgtccgtaattcaaaagagaaaagtaagtcctcccct 69  Q
    |||||||| ||||||||||| |||| |||||||| |||||||||||    
T  22186881 attttataatgtccgtaatttaaaaaagaaaagtgagtcctcccct 22186926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 22591558 - 22591623
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaatcc 78  Q
    |||| |||||||||||||||||||| ||||| |||  ||||||||||||  |||||||||||||||    
T  22591558 tttttaaaaatattttatagtgtccttaatttaaacaagaaaagtaagtaatcccctccaaaatcc 22591623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 38198189 - 38198258
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcca 72  Q
    |||||||| ||||||||||| | ||||||||||| |||||| ||||  ||||||||||||||||| ||||    
T  38198189 acttaattcattttaaaaaacactttatagtgtctgtaatttaaaaatgaaaagtaagtcctcccatcca 38198258  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 1281294 - 1281352
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||||||||||| ||||||||||||||| ||||  ||||| ||| |||||||||||    
T  1281294 ttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaactaaatcctcccctcc 1281352  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 34552664 - 34552608
Alignment:
Q  4 cttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaag 60  Q
    ||||||| ||||||||||| ||| |||||||||  ||||| ||||||||||||||||    
T  34552664 cttaattaattttaaaaaacattatatagtgtcaataatttaaaagagaaaagtaag 34552608  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 29358433 - 29358398
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaa 48  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29358433 ttttaaaaaatattttatagtgtccgtaatttaaaa 29358398  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 42919871 - 42919909
Alignment:
Q  5 ttaattgattttaaaaaatattttatagtgtccgtaatt 43  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  42919871 ttaatttattttaaaaaatattttatagtatccgtaatt 42919909  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 10028278 - 10028331
Alignment:
Q  17 aaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctc 70  Q
    ||||||||||| ||||||||||||||| |||||  ||||||||  |||||||||    
T  10028278 aaaaaatatttcatagtgtccgtaatttaaaagtaaaaagtaaaccctcccctc 10028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 26167851 - 26167791
Alignment:
Q  12 attttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcca 72  Q
    |||||||||| |||||| || ||||||||||| |||| |||||| |||||| || ||||||    
T  26167851 attttaaaaattattttttactgtccgtaatttaaaaaagaaaattaagtcatctcctcca 26167791  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 36166230 - 36166270
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaatt 43  Q
    |||| ||||||||| |||||||||||||| |||||||||||    
T  36166230 acttgattgatttttaaaaatattttataatgtccgtaatt 36166270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 44114214 - 44114282
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||||||||| | |||| | |||||||||| | ||||| |||| ||||||  ||||||||||||||    
T  44114214 acttaattgatttaagaaaacagtttatagtgttcataatttaaaaaagaaaatgaagtcctcccctcc 44114282  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 42283123 - 42283184
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcct 64  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||  ||||||||||||||    
T  42283123 acttgattgatttaagaaaatattctatagtgtccgtaattcaaaaatgaaaagtaagtcct 42283184  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 44040859 - 44040810
Alignment:
Q  5 ttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaa 54  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  44040859 ttaattgattttaaaaactattttatagtatccgtaatttaaaagagaaa 44040810  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 33224191 - 33224136
Alignment:
Q  5 ttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaag 60  Q
    ||||||||||| ||||||||||||||||||||   |||| ||||||||||||||||    
T  33224191 ttaattgatttaaaaaaatattttatagtgtcaaaaattaaaaagagaaaagtaag 33224136  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 48094047 - 48094109
Alignment:
Q  16 taaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaatcc 78  Q
    ||||||| ||||||||| || ||||||| |||| |||||||||| ||||||||||| ||||||    
T  48094047 taaaaaagattttatagcgttcgtaatttaaaaaagaaaagtaaatcctcccctcctaaatcc 48094109  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 1013992 - 1013955
Alignment:
Q  38 gtaattcaaaagagaaaagtaagtcctcccctccaaaa 75  Q
    |||||| |||||||||||||||||||||||||||||||    
T  1013992 gtaatttaaaagagaaaagtaagtcctcccctccaaaa 1013955  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 24970258 - 24970200
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||||||||||| ||||| ||||||||| ||||  ||||||||| || ||||||||    
T  24970258 ttttaaaaaatatttcatagtatccgtaatttaaaaatgaaaagtaaatcatcccctcc 24970200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 30592346 - 30592292
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctccc 67  Q
    |||||||||  ||||||||||||| |||||| |||| ||||||||||| ||||||    
T  30592346 ttttaaaaatcattttatagtgtctgtaatttaaaaaagaaaagtaagccctccc 30592292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 40196625 - 40196579
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaa 59  Q
    ||||| |||| |||||||||||||||||||||||||  |||||||||    
T  40196625 ttttataaaacattttatagtgtccgtaattcaaaaatgaaaagtaa 40196579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 2087832 - 2087783
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtc 62  Q
    ||||||||| ||||||||| | ||||||||| |||| |||||||||||||    
T  2087832 ttttaaaaattattttataatatccgtaatttaaaaaagaaaagtaagtc 2087783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22599904 - 22599957
Alignment:
Q  3 acttaattgatttt-aaaaaatattttatagtgtccgtaattcaaaagagaaaa 55  Q
    |||||||||||||| ||||||||||||||| ||||| || ||||||| ||||||    
T  22599904 acttaattgatttttaaaaaatattttataatgtccatagttcaaaaaagaaaa 22599957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 48881646 - 48881593
Alignment:
Q  18 aaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||| | ||||||||    
T  48881646 aaaattattttataatgtccgtaatttaaaaaagaaaagtaagccatcccctcc 48881593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 47391006 - 47391042
Alignment:
Q  12 attttaaaaaatattttatagtgtccgtaattcaaaa 48  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  47391006 attttaaaaaatgttttatagtgtccgtaatttaaaa 47391042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1816051 - 1816103
Alignment:
Q  25 ttttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaatc 77  Q
    ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||    
T  1816051 ttttataatgtccttaatttaaaatagaaaagtaagtcctcccctccaaaatc 1816103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 25179976 - 25179926
Alignment:
Q  24 attttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaa 74  Q
    |||||||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  25179976 attttatagtgtccataatttaaaaatgaaaagtaagtcctcccctccaaa 25179926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 34641152 - 34641199
Alignment:
Q  24 attttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||||||| ||||||||||| |||| ||||||||||| ||||||||||    
T  34641152 attttataatgtccgtaatttaaaaaagaaaagtaagccctcccctcc 34641199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 49815524 - 49815453
Alignment:
Q  4 cttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctccaaaa 75  Q
    ||||||| ||||| ||||| ||||||||||    |||||| |||| ||||||||||| ||||||||||||||    
T  49815524 cttaatttatttttaaaaacattttatagtacttgtaatttaaaaaagaaaagtaagccctcccctccaaaa 49815453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 45663287 - 45663329
Alignment:
Q  6 taattgattttaaaaaatattttatagtgtccgtaattcaaaa 48  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||    
T  45663287 taatttattttaaaaaatattttatattgtccgtaattgaaaa 45663329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 10818366 - 10818425
Alignment:
Q  12 attttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    ||||||||||| |||| ||||||||||||||| ||||  |||||||||  ||||||||||    
T  10818366 attttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcc 10818425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 30850008 - 30849949
Alignment:
Q  12 attttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||||||||||||||||||||| | ||||||| ||||  |||| |||| |||||||||||    
T  30850008 attttaaaaaatattttatagtatgcgtaatttaaaaacgaaatgtaaatcctcccctcc 30849949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 16509384 - 16509322
Alignment:
Q  3 acttaattgattttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctc 65  Q
    |||| ||| ||||| ||||| |||||||||||||  |||||||||| ||||||||||| ||||    
T  16509384 acttgatttatttttaaaaacattttatagtgtctttaattcaaaaaagaaaagtaagccctc 16509322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 19278127 - 19278081
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaa 59  Q
    |||||||||||||||||||||||| |||||| ||||  |||||||||    
T  19278127 ttttaaaaaatattttatagtgtcagtaatttaaaaatgaaaagtaa 19278081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 242367 - 242425
Alignment:
Q  13 ttttaaaaaatattttatagtgtccgtaattcaaaagagaaaagtaagtcctcccctcc 71  Q
    |||||||||  |||||||| ||||||||||| |||| ||||||||||  ||||||||||    
T  242367 ttttaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcc 242425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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