View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_39 (Length: 469)
Name: NF19175_high_39
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 15807844 - 15808295
Alignment:
| Q |
1 |
cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807844 |
cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt |
15807943 |
T |
|
| Q |
101 |
cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807944 |
cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat |
15808043 |
T |
|
| Q |
201 |
agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15808044 |
agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga |
15808143 |
T |
|
| Q |
301 |
ggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatcttgagtggccatgaagtaagagatatgaaatcagctaatatatgttttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15808144 |
ggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatcttgagtggccatgaagtaagagatatgaaatcagctaatatatgttttt |
15808243 |
T |
|
| Q |
401 |
tataatttgtagtcaacagaatcatcaactgatatatttgcatcaatttctt |
452 |
Q |
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| T |
15808244 |
tataatttgtagtcaacagaatcatcaactgatatatttgcatcaatttctt |
15808295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 15815386 - 15815451
Alignment:
| Q |
245 |
ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa |
307 |
Q |
| |
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| T |
15815386 |
ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa |
15815451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 15831701 - 15831766
Alignment:
| Q |
245 |
ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa |
307 |
Q |
| |
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|||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
15831701 |
ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa |
15831766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 25287110 - 25287282
Alignment:
| Q |
1 |
cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||| | |||||| |||||||||||||||||||| |
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| T |
25287110 |
cagtttaattttattacatgactctaatcctattgccttaaacaacaataacacaattcaatccttcagcgaaaatcgattttcacataaaatccattaa |
25287209 |
T |
|
| Q |
101 |
cacatgcatcaaccaaccacaacaaatc-taaagttcaaaaaataagacataaaatataactaccttagcatcc |
173 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||| |
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| T |
25287210 |
cacatacatcaacc-accacaacaaatcaaaaagttaaaaaaagaagacataaattataactaccttagcatcc |
25287282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 17204497 - 17204357
Alignment:
| Q |
88 |
taaaatccattttcacatgcatcaaccaaccacaacaaatcta-aagttcaaaaaataagacata-aaat-ataactaccttagcatcctgatcaaa--c |
182 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||| | |||||| |||| ||||||||| |||| ||||||||||||||||||||| |||| | |
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| T |
17204497 |
taaaatccatttccacatacatcaaccaaccacaacaaatcaacaagttccaaaactaagacatacaaatcataactaccttagcatcctgaccaaactc |
17204398 |
T |
|
| Q |
183 |
ctccttaagcatcccaatagaaccaggatcacaagcatcat |
223 |
Q |
| |
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|| ||||| |||||||||||||||||| ||||| |||||| |
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| T |
17204397 |
cttcttaaaaatcccaatagaaccaggaccacaaacatcat |
17204357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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