View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_40 (Length: 457)
Name: NF19175_high_40
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 33141016 - 33140577
Alignment:
| Q |
1 |
tctctaaatgcgaattcaaagcctttattgattgccacatctttccatttgtcaaactcggacactgtcttcaaagctgtagtcccatgaccaacagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
33141016 |
tctctaaatgcgaattcaaagcctttattgatcgccacatctttccatttgtcaaactcggacactgtcttcaaaactgaagtcccatgaccaacagaag |
33140917 |
T |
|
| Q |
101 |
tcacaatagaccctttggttacaattgcccatcctgtctcattcttgtatgaaagcaatttctcaacctgctgtgtaacagtgtttgttttctcatgcat |
200 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
33140916 |
tcacaatagaccctttggttacaattgcccacccagtctcattcttgtaagaaagcaatttctcaacctgttgtgttacagtgtttgttttctcatgcat |
33140817 |
T |
|
| Q |
201 |
cttggtcacaaacaaactttctacctttttccaaaagttgttaaccacatttggctgttgagactccaagcaaaacaggtcaattgaagtcttcgtctgc |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33140816 |
cttggtcacaaacaaactttctacctttttccagaagttgttaaccacatttggctgttgagactccaagcaaaacaggtcaattgaagtcttcgtctgc |
33140717 |
T |
|
| Q |
301 |
ttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaatgatgacagacttttcctcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33140716 |
ttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaatgatgacagacttttcctcct |
33140617 |
T |
|
| Q |
401 |
tcttcagtgtccaaagataacatgaaagtacaacattagt |
440 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33140616 |
tcttcagtgtccaaagataacatgaaagtacaacattagt |
33140577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 41 - 387
Target Start/End: Complemental strand, 33159596 - 33159250
Alignment:
| Q |
41 |
ctttccatttgtcaaactcggacactgtcttcaaagctgtagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccatcctgtctc |
140 |
Q |
| |
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|||||||| || ||||||| | | |||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||| ||| |
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| T |
33159596 |
ctttccatgtgccaaactctgcaaatgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactc |
33159497 |
T |
|
| Q |
141 |
attcttgtatgaaagcaatttctcaacctgctgtgtaacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccaaaagttg |
240 |
Q |
| |
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||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
33159496 |
atttttgtaagaaagcaatttctcaacctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtg |
33159397 |
T |
|
| Q |
241 |
ttaaccacatttggctgttgagactccaagcaaaacaggtcaattgaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttag |
340 |
Q |
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|||||||||||| | ||||||||||||||||||| || ||||| ||||| || ||||||||||||| |||||||||| | || |||||| |||||| | |
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| T |
33159396 |
ttaaccacattttgttgttgagactccaagcaaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttg |
33159297 |
T |
|
| Q |
341 |
tgaactgttgaatccattccttatctttacctccataaatgatgaca |
387 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33159296 |
tgaattgttgaatccattccttatctttacctccacaaatgatgaca |
33159250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 41 - 387
Target Start/End: Complemental strand, 33182440 - 33182094
Alignment:
| Q |
41 |
ctttccatttgtcaaactcggacactgtcttcaaagctgtagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccatcctgtctc |
140 |
Q |
| |
|
|||||||| || ||||||| | | |||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||| ||| |
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| T |
33182440 |
ctttccatgtgccaaactctgcaaatgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactc |
33182341 |
T |
|
| Q |
141 |
attcttgtatgaaagcaatttctcaacctgctgtgtaacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccaaaagttg |
240 |
Q |
| |
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||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
33182340 |
atttttgtaagaaagcaatttctcaacctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtg |
33182241 |
T |
|
| Q |
241 |
ttaaccacatttggctgttgagactccaagcaaaacaggtcaattgaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttag |
340 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| || ||||| ||||| || ||||||||||||| |||||||||| | || |||||| |||||| | |
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| T |
33182240 |
ttaaccacattttgttgttgagactccaagcaaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttg |
33182141 |
T |
|
| Q |
341 |
tgaactgttgaatccattccttatctttacctccataaatgatgaca |
387 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33182140 |
tgaattgttgaatccattccttatctttacctccacaaatgatgaca |
33182094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 33287104 - 33287501
Alignment:
| Q |
15 |
ttcaaagcctttattgattgccacatctttccatttgtcaaactcggacactgtcttcaaagctgtagtcccatgaccaacagaagtcacaatagaccct |
114 |
Q |
| |
|
||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||| | ||||||| ||||| ||||||| | |||||||||| ||| |
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| T |
33287104 |
ttcaaagccctttttaattgccacttctttccatttgtcaaactcggacactgttttcgacactgtagtaccatggccaacagcaatcacaatagaacct |
33287203 |
T |
|
| Q |
115 |
ttggttacaattgcccatcctgtctcattcttgtatgaaagcaatttctcaacctgctgtgtaacagtgtttgtt------ttctcatgcatcttggtca |
208 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| | ||| ||| |||| || | || ||||||||| | |
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| T |
33287204 |
ttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttttacactgtctgttgtatcattattattcatcttggtga |
33287303 |
T |
|
| Q |
209 |
caaacaaactttctacctttttccaaaagttgttaaccacatttggctgttgagactccaagcaaaacaggtcaattgaagtcttcgtctgcttaatagc |
308 |
Q |
| |
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||||||||| || |||||| ||||||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||| | |||||||||| |
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| T |
33287304 |
gaaacaaactctccacctttgtccaaaatttgttaaccacatttggcttttgagactccaagcttaacaactcaattgaagtctttgcctgcttaatatt |
33287403 |
T |
|
| Q |
309 |
ggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaatgatgacagacttttcctccttcttca |
406 |
Q |
| |
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| |||||||||||| ||| |||| |||| ||||| | ||| |||||| ||||||||||||||||||||||||| ||| |||| ||||||| ||||| |
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|
| T |
33287404 |
tgtatcatttgctagggcagtagcaaacttggtgaattcttggatccatgccttatctttacctccataaatgataacaaacttctcctcctccttca |
33287501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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