View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_50 (Length: 422)
Name: NF19175_high_50
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 14552085 - 14552479
Alignment:
| Q |
14 |
atttgtacatacacacagaaaaggaaactaaatagcagattcgttagccaaagcagaagcatgcatggaggggaggctgatctttgctgtataaatctgg |
113 |
Q |
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| T |
14552085 |
atttgtacatacacacagaaaaggaaactaaatagcagattcgttagccaaagcagaagcatgcatggaggggaggctgatctttgctgtataaatgtgg |
14552184 |
T |
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| Q |
114 |
ttctgtctttttggtttatggggtattgatattttgcagggacattttgaatgctaatacnnnnnnnnnncaatggctgctaggtctgattctttgatag |
213 |
Q |
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| T |
14552185 |
ttctgtctttttggtttatggggtattgatattttgcagggacattttgaatgctaatacttttttttttcaatggctgctaggtctgattctttgatag |
14552284 |
T |
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| Q |
214 |
ct--gttcaaactcttggttttgtggctgctgttttgagcatgtcattgctgaattgctttctttatagcagagttgctattttatggttgcgtcttggt |
311 |
Q |
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| T |
14552285 |
cttggttcaaactcttggttttgtggctgctgttttgagcatgacattgctgaattgctttctctatagcagagttgctattttatggttgcgtcttggt |
14552384 |
T |
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| Q |
312 |
gcttggtttcatgtcaaatggtgctctaccgtgaagtctgatgggtgtgttattttttgtgcaaataatgtatgttatgtagtttatgggggtgg |
406 |
Q |
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| T |
14552385 |
gcttggtttcatgtcaaatggtgctctaccgtgaagtctgatgggtgtgttattttttgtgcaaataatgtatgttatgtagtttttgggggtgg |
14552479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 185 - 361
Target Start/End: Complemental strand, 16845421 - 16845243
Alignment:
| Q |
185 |
aatggctgctaggtctgattctttgatagct--gttcaaactcttggttttgtggctgctgttttgagcatgtcattgctgaattgctttctttatagca |
282 |
Q |
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| T |
16845421 |
aatggctgctaggtctgattctttgatagcctggttcaaactcttggtttggtggctgctgttttgagcatgacattggtgaattgtttgctttatagca |
16845322 |
T |
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| Q |
283 |
gagttgctattttatggttgcgtcttggtgcttggtttcatgtcaaatggtgctctaccgtgaagtctgatgggtgtgt |
361 |
Q |
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| T |
16845321 |
gagttgctattttatggttgtgtctcggtgcctggtttcatgtcagatggtgctctagtctgatgtctgatgtgtgtgt |
16845243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 16845549 - 16845469
Alignment:
| Q |
14 |
atttgtacatacacacagaaaaggaaactaaatagcagattcgttagccaaagcagaagcatgcatggaggggaggctgat |
94 |
Q |
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| T |
16845549 |
atttgtacatacgcacagagaaggaaactaaatagcagattcgttagccaaagtagaagcatgcttggaggggaggctgat |
16845469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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