View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_high_52 (Length: 410)

Name: NF19175_high_52
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_high_52
NF19175_high_52
[»] chr2 (7 HSPs)
chr2 (19-195)||(2502384-2502560)
chr2 (196-340)||(26613120-26613265)
chr2 (147-195)||(41768743-41768791)
chr2 (155-198)||(5278332-5278375)
chr2 (128-195)||(37545676-37545743)
chr2 (366-399)||(26613288-26613321)
chr2 (147-195)||(40727869-40727917)
[»] chr4 (4 HSPs)
chr4 (83-175)||(1013942-1014034)
chr4 (141-196)||(45330564-45330619)
chr4 (125-195)||(47377576-47377646)
chr4 (146-195)||(1013324-1013373)
[»] chr1 (3 HSPs)
chr1 (114-180)||(14285549-14285615)
chr1 (128-196)||(11031430-11031498)
chr1 (147-195)||(37822472-37822520)
[»] chr6 (2 HSPs)
chr6 (125-195)||(24125972-24126042)
chr6 (128-165)||(2038626-2038663)
[»] chr3 (1 HSPs)
chr3 (147-195)||(53870553-53870601)
[»] chr7 (4 HSPs)
chr7 (128-195)||(27599211-27599278)
chr7 (141-196)||(27600089-27600144)
chr7 (147-197)||(5487382-5487432)
chr7 (151-195)||(9122650-9122694)
[»] chr5 (4 HSPs)
chr5 (147-194)||(6804833-6804880)
chr5 (113-165)||(25075001-25075053)
chr5 (113-165)||(25132970-25133022)
chr5 (128-168)||(32944465-32944505)
[»] chr8 (1 HSPs)
chr8 (113-165)||(38572252-38572304)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 2502384 - 2502560
Alignment:
Q  19 gttagaatggttatattcttgagggtggagagaggaggttgagggtggagataggaggtaaagagaaatttgatacagacataccataacaaatttgtgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||||| |||||    
T  2502384 gttagaatggttatattcttgagggtggagagaggaggttgagggtggagataggaggtaaagagagatttgatacagacagatcatagcaaatctgtgt 2502483  T
Q  119 tcttgattaaatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  2502484 tcttgattaaatctaatggtttaatctaacttttccatggtggaaaacaacttcactatcccaggttaaaagccacc 2502560  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 26613120 - 26613265
Alignment:
Q  196 ctttgggaatcattcacgtttgaatgttcccccgtggctaattgtgcatcatttgtgtgggaaaatgatgaaatggcggcagttggagagctcgagatca 295  Q
    ||||||||||||||||||||||||||||||||  || ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26613120 ctttgggaatcattcacgtttgaatgttcccctctgactacttgtgcatcgtttgtgtgggaaaatgatgaaatggcggcaattggagagctcgagatca 26613219  T
Q  296 acgagacgcattgattgacatgtt-ccatcgcagtagatggtttag 340  Q
    |||||||||||||||||||||||| || || || ||||||||||||    
T  26613220 acgagacgcattgattgacatgttgccttcacaatagatggtttag 26613265  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 41768743 - 41768791
Alignment:
Q  147 acttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||| |||||||||||||||||||||||| |||| | |||||||||||    
T  41768743 actttcccatggtgggaaacaacttcactgacccatgctaaatgccacc 41768791  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 5278332 - 5278375
Alignment:
Q  155 atggtgggaaacaacttcactgtcccaggttaaatgccaccctt 198  Q
    ||||||||||| || |||| ||||||||||||||||||||||||    
T  5278332 atggtgggaaaaaatttcattgtcccaggttaaatgccaccctt 5278375  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 37545743 - 37545676
Alignment:
Q  128 aatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||||||   ||||||||||| |||||||||||||||||||| || ||| |  ||||||||||||    
T  37545743 aatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcctattttaaatgccacc 37545676  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 399
Target Start/End: Original strand, 26613288 - 26613321
Alignment:
Q  366 aatcatgtcatccaacttcaaaaatttgtttctt 399  Q
    ||||||||||||||||||| ||||||||||||||    
T  26613288 aatcatgtcatccaacttcgaaaatttgtttctt 26613321  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 40727869 - 40727917
Alignment:
Q  147 acttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||| ||||||||||| || |||| |||||||| ||||||||||||    
T  40727869 acttttctatggtgggaaaaaatttcattgtcccagattaaatgccacc 40727917  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 1013942 - 1014034
Alignment:
Q  83 gaaatttgatacagacataccataacaaatttgtgttcttgattaaatctaatggcttaatttaacttttccatggtgggaaacaacttcact 175  Q
    |||||||||||| |||| ||||||  ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  1013942 gaaatttgatactgacagaccatagtaaatttgtgttcttgattaaatctaatggtttaatctaactttcccatggtgggaaacaacttcact 1014034  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 45330619 - 45330564
Alignment:
Q  141 aatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccaccc 196  Q
    |||||||||||||||||||||||||||||| | || |||||  |||||| ||||||    
T  45330619 aatttaacttttccatggtgggaaacaactcccctttcccattttaaattccaccc 45330564  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 47377576 - 47377646
Alignment:
Q  125 ttaaatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||| | || |||||  ||||||| ||||    
T  47377576 ttaaatctaatggctgaaaataactttcccatggtgggaaacaactcccctttcccaaattaaatggcacc 47377646  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 1013373 - 1013324
Alignment:
Q  146 aacttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||| ||||    
T  1013373 aactttcctatggtgggaaaaaactttactgtcccaggttaaatgtcacc 1013324  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 14285615 - 14285549
Alignment:
Q  114 tgtgttcttgattaaatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtccc 180  Q
    |||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  14285615 tgtgttcttgattagatctattggtttaatctaacttttccatggtggaaaacaacttcactgtccc 14285549  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 11031498 - 11031430
Alignment:
Q  128 aatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccaccc 196  Q
    ||||||||||   ||||||||||| |||||||||||||| | | | || ||||| ||||||||||||||    
T  11031498 aatctaatggtcaaatttaactttcccatggtgggaaactattcccctttcccatgttaaatgccaccc 11031430  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 37822520 - 37822472
Alignment:
Q  147 acttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||||||||||||||| |||||  || |||||||||||||| ||||    
T  37822520 acttttccatggtgggaaagaactttcctttcccaggttaaatgacacc 37822472  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 24126042 - 24125972
Alignment:
Q  125 ttaaatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||| | || |||||  ||||||||||||    
T  24126042 ttaaatctaatggctgaaaataactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 2038663 - 2038626
Alignment:
Q  128 aatctaatggcttaatttaacttttccatggtgggaaa 165  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  2038663 aatctaatggcttaagttaactttcccatggtgggaaa 2038626  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 53870553 - 53870601
Alignment:
Q  147 acttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||| ||||||||||| || |||| |||||||||||||||||||||    
T  53870553 acttttctatggtgggaaaaaatttcattgtcccaggttaaatgccacc 53870601  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 27599278 - 27599211
Alignment:
Q  128 aatctaatggcttaatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    ||||||||||   ||||||||||| |||||||||||||||||| | || |||||  ||||||||||||    
T  27599278 aatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 27600089 - 27600144
Alignment:
Q  141 aatttaacttttccatggtgggaaacaacttcactgtcccaggttaaatgccaccc 196  Q
    ||||||||||| |||||||||||||||||| | || |||||  |||||||||||||    
T  27600089 aatttaactttcccatggtgggaaacaactcccctttcccattttaaatgccaccc 27600144  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 5487382 - 5487432
Alignment:
Q  147 acttttccatggtgggaaacaacttcactgtcccaggttaaatgccaccct 197  Q
    ||||||||||||||||||| ||||||  | |||||||||||| ||||||||    
T  5487382 acttttccatggtgggaaagaacttccatttcccaggttaaacgccaccct 5487432  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 9122694 - 9122650
Alignment:
Q  151 ttccatggtgggaaacaacttcactgtcccaggttaaatgccacc 195  Q
    |||||||||||||||||||||| || ||||| | |||||||||||    
T  9122694 ttccatggtgggaaacaacttccctttcccatgctaaatgccacc 9122650  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 6804833 - 6804880
Alignment:
Q  147 acttttccatggtgggaaacaacttcactgtcccaggttaaatgccac 194  Q
    ||||| |||||||||||||||||||||||| |||| | ||||||||||    
T  6804833 actttcccatggtgggaaacaacttcactgacccatgctaaatgccac 6804880  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 25075001 - 25075053
Alignment:
Q  113 ttgtgttcttgattaaatctaatggcttaatttaacttttccatggtgggaaa 165  Q
    |||||||||| | | |||||||||||| || |||||||| |||||||||||||    
T  25075001 ttgtgttcttcaattaatctaatggctaaagttaactttcccatggtgggaaa 25075053  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 25132970 - 25133022
Alignment:
Q  113 ttgtgttcttgattaaatctaatggcttaatttaacttttccatggtgggaaa 165  Q
    |||||||||| | | |||||||||||| || |||||||| |||||||||||||    
T  25132970 ttgtgttcttcaattaatctaatggctaaagttaactttcccatggtgggaaa 25133022  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 32944465 - 32944505
Alignment:
Q  128 aatctaatggcttaatttaacttttccatggtgggaaacaa 168  Q
    |||||||||||| |  |||||||||||||||||||||||||    
T  32944465 aatctaatggctaacattaacttttccatggtgggaaacaa 32944505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 38572304 - 38572252
Alignment:
Q  113 ttgtgttcttgattaaatctaatggcttaatttaacttttccatggtgggaaa 165  Q
    |||||||||| | | |||||||||| |||| |||||||| |||||||||||||    
T  38572304 ttgtgttcttcaattaatctaatggtttaagttaactttcccatggtgggaaa 38572252  T

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