View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_59 (Length: 388)
Name: NF19175_high_59
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 50766978 - 50766620
Alignment:
| Q |
18 |
ctcttgatgcatgggatgatgttttaactgtgtctgttcaacttcggatgagnnnnnnntgggattcaatcatctcggtaagaaacacatgctgctagtg |
117 |
Q |
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| T |
50766978 |
ctcttgatgcatgggatgacgttttaactgtgtctgttcaacttcggatgagaaaaaaatgggattcaatcatctcggtaagaaacacatgctgctagtg |
50766879 |
T |
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| Q |
118 |
catgcatactaatcttatacttccannnnnnnnnnnnnnnnnagcaatctaaatatttgaataatgaattcccttttgcaatgtctcaccatcgaatcca |
217 |
Q |
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| T |
50766878 |
catgcatactaatcttatacttccattttatttttcatttttagcaatctaaatatttgaataatgaattcccttttgcaatgtctcaccatcgaatcca |
50766779 |
T |
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| Q |
218 |
tcgtgaacttgtgattcatgtgttagcatatacttcacaggatttggaatgtggcaatattggatatacatttgaatccttaggcaatgacagttacttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766778 |
tcgtgaacttgtgattcatgtgttagcatatacttcacaggatttggaatgtgacaatattggatatacatttgaatccttaggcaatgacagttacttt |
50766679 |
T |
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| Q |
318 |
taggttttgctagtcataacaggaaagtaaagaacagattgtgttaggtgtaactccta |
376 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
50766678 |
taggttttgctagtcatagcaggaaagtaaagaacggattgtgttaggtgtgactccta |
50766620 |
T |
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