View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_63 (Length: 377)
Name: NF19175_high_63
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_63 |
 | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 47 - 364
Target Start/End: Original strand, 33953913 - 33954216
Alignment:
| Q |
47 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttctttt-gtataaatacatgatttgtattagctattctca |
145 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33953913 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttctttttgtataaatacatgatttgtattagctattctca |
33954012 |
T |
|
| Q |
146 |
atcaataaattcaattttaaannnnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaactct |
245 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33954013 |
atcaataaattcaatttttaatttttttatcagctcattctattgatttatttacattctaataaggtggtagtaaatccttctatgcttctccaactct |
33954112 |
T |
|
| Q |
246 |
aaaaagcttttcgtagtccttaggttcatactttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaa |
345 |
Q |
| |
|
||||||||||| ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33954113 |
aaaaagctttttgtagtcctttggttc-------------cc--tgtttctgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaa |
33954197 |
T |
|
| Q |
346 |
aatttgtcaagcatggtct |
364 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33954198 |
aatttgtcaagcatggtct |
33954216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 47 - 364
Target Start/End: Original strand, 33976514 - 33976819
Alignment:
| Q |
47 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
146 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33976514 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
33976613 |
T |
|
| Q |
147 |
tcaataaattcaattttaaannnnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaactcta |
246 |
Q |
| |
|
|||||| |||||||||| || | | ||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
33976614 |
tcaatatattcaatttttaa---ttttaactactcattctaatgatttatttacatgataataaggtggtag----------tatgcttctccagttcta |
33976700 |
T |
|
| Q |
247 |
aaaagcttttcgtagtccttaggttc--atactttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctca |
344 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33976701 |
aaaagcttttcgtagtccttaggttcctttttttttttgttcc-ttgtttctgagttcttcagtcatagatcaaagtcggctagaagcagttgatcctca |
33976799 |
T |
|
| Q |
345 |
aaatttgtcaagcatggtct |
364 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
33976800 |
aaatttgccaagcatggtct |
33976819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 47 - 364
Target Start/End: Original strand, 33961219 - 33961522
Alignment:
| Q |
47 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
146 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33961219 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
33961318 |
T |
|
| Q |
147 |
tcaataaattcaattttaaannnnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaactcta |
246 |
Q |
| |
|
|||||| |||||||||| || | | ||||||||| ||||||||||||| || |||||| |||||| |||||||||||| |||| |
|
|
| T |
33961319 |
tcaatatattcaatttttaa---ttttaactactcattctaatgatttatttacaagataataagctggtag----------tatgcttctccagttcta |
33961405 |
T |
|
| Q |
247 |
aaaagcttttcgtagtccttaggttcatactttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaaa |
346 |
Q |
| |
|
||||| |||||||||||||||||||| | ||| ||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33961406 |
aaaagtttttcgtagtccttaggttcctttttttttgttcc-ttgtttctgagttcttcagtcatagatcaaagtcggctagaagcagttgatcctcaaa |
33961504 |
T |
|
| Q |
347 |
atttgtcaagcatggtct |
364 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
33961505 |
attttccaagcatggtct |
33961522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 33993433 - 33993550
Alignment:
| Q |
47 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttc-ttttgtataaatacatgatttgtattagctattctca |
145 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993433 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttctttttgtataaatacatgatttgtattagctattctca |
33993532 |
T |
|
| Q |
146 |
atcaataaattcaatttt |
163 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
33993533 |
atcaatatattcaatttt |
33993550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 33983677 - 33983733
Alignment:
| Q |
107 |
tcttttgtataaatacatgatttgtattagctattctcaatcaataaattcaatttt |
163 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33983677 |
tcttttgtataactacatgatttgtattagctattctcaatcaataaattcaatttt |
33983733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 364
Target Start/End: Original strand, 33983751 - 33983937
Alignment:
| Q |
179 |
ctcattctattgatttatttacatgacaataaggtggtagtaaacccttctat--gcttctccaactct-aaaaagcttttcgt-agtccttaggttcat |
274 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| | ||||||| |||||||| | |||||||||||| ||||||||||| | ||| |||||||| | |
|
|
| T |
33983751 |
ctcattctatagatttttttacatgataataaagc--tagtaaatccttctatatggttctccaactcttaaaaagcttttttttagtacttaggtttct |
33983848 |
T |
|
| Q |
275 |
actttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaaaatttgtcaagcatggtct |
364 |
Q |
| |
|
| |||||| |||| | ||| ||||||||||||||||||||||| | ||||| ||| || ||||||| ||| ||||||| |||||||| |
|
|
| T |
33983849 |
attttctttttccctattttt-gagttcttcaatcatagatcaaatttggcaaaaagttgtcgatcctccaaacttgtcaaacatggtct |
33983937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33983503 - 33983569
Alignment:
| Q |
1 |
ttgatgttaacttaaattggcttcaataaatgatctgctaagacctcttctttgaatgacttttgta |
67 |
Q |
| |
|
|||||| ||||||||| | ||| | |||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
33983503 |
ttgatgctaacttaaactaactttagtaaatgatctcataagacctcttctttgaatgacttctgta |
33983569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 8275392 - 8275222
Alignment:
| Q |
69 |
agtatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaatcaataaattcaattttaaann |
168 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||| || |
|
|
| T |
8275392 |
agtatataactaaaattcttttgtaatcttttgtaaattcttttgtataaatgcatgatttgtattagctattcttaatcaatagattaaatttttaa-- |
8275295 |
T |
|
| Q |
169 |
nnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaa |
241 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| ||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
8275294 |
tttttatctactcattctatagatttgtttacatgataataaggtgctagtaaatcctcctatgcttctccaa |
8275222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8275534 - 8275468
Alignment:
| Q |
1 |
ttgatgttaacttaaattggcttcaataaatgatctgctaagacctcttctttgaatgacttttgta |
67 |
Q |
| |
|
||||||||||||||||||| | ||| |||| ||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
8275534 |
ttgatgttaacttaaattgccatcattaaaggatctgctacgaccgcttctttgaatggattttgta |
8275468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13457 - 13510
Alignment:
| Q |
1 |
ttgatgttaacttaaattggcttcaataaatgatctgctaagacctcttctttg |
54 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||||| |||| |
|
|
| T |
13457 |
ttgatgttaacttaaattggcttcagtaaatgatctcccaagacctcttatttg |
13510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University