View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_64 (Length: 373)
Name: NF19175_high_64
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 52511063 - 52511420
Alignment:
| Q |
1 |
taaaatgagttttattttaaagtatccttattagcaagtataatacaacgaataagaatacttgaatgagtttatcnnnnnnnn-gaataccttgaatga |
99 |
Q |
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| T |
52511063 |
taaaatgatatttattttaaagtatccttattagcaagtataatacaacgaataagaatacttgaatgagtttataaaaaaaaaagaataccttgaatga |
52511162 |
T |
|
| Q |
100 |
gaaaaaataactaaaatgacaaataatgttacaaacatgacacttaatatttaaannnnnnnaatatatccccttatnnnnnnnntgaattttggatata |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
52511163 |
gaaaaaataactaaaatgacaaataatgttacaaacatgacacttaatatttaaaattttgga-tatatcccctta--aaaaaaatgaattttggatata |
52511259 |
T |
|
| Q |
200 |
taataatttagattaattgcacgatattatatcagatattgtttcttcttaaaataccttaaagggtgggcatgaagggcgtgattctgatgaagatcgt |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52511260 |
taataattcagattaattgcacgatattatatcagatattgtttcttcttaaaataccttaaagggtgggcatgaaggacgtgattctgatgaagatcgt |
52511359 |
T |
|
| Q |
300 |
gatttcttcaacgccgtttgagattgagaaacctttgactccatcaaggtgcaccctctct |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511360 |
gatttcttcaacgccgtttgagattgagaaacctttgactccatcaaggtgcaccctctct |
52511420 |
T |
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