View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_67 (Length: 365)
Name: NF19175_high_67
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 30838521 - 30838191
Alignment:
| Q |
16 |
atggtttaatagtttgaaattcgattagaagtaactaaaaattgatctaatattatgttggctagatatcaaattaaagtactacttatgaattcgaact |
115 |
Q |
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| T |
30838521 |
atggtttaatagtttgaaattcgattagaagtaactaaaaattgatctaatattatgttggctagatatcaaattaaagtactacttatgaattcgaact |
30838422 |
T |
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| Q |
116 |
ttaaatcccatattgaccatttgagttaaatgacttagtttgatattgaatataaaggattggagatggcacactatatttatggattatatgtaggaaa |
215 |
Q |
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| T |
30838421 |
ttaaatcccatattgaccatttgagttaaatgacttattttgatattgaatataaaggattggagatggtacactatatttatggattatatgtaggaaa |
30838322 |
T |
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| Q |
216 |
ccaaattaaggacataaactctgcacca--ttacctataaacaaacttcagtagaaataaattatatatgattactaagctgaataaatatataaatata |
313 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30838321 |
ccaaattaaggacataaactctgcatcaatttacctataaacaaacttcagtagaaataaattatatatgattacttagctgaataaatatataaatata |
30838222 |
T |
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| Q |
314 |
aaggatcaaattacaatagtataacaccttc |
344 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30838221 |
aaggatcaaattacaatagtataacaccttc |
30838191 |
T |
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