View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_high_7 (Length: 698)

Name: NF19175_high_7
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_high_7
NF19175_high_7
[»] chr3 (5 HSPs)
chr3 (14-334)||(1328049-1328369)
chr3 (330-679)||(8528696-8529046)
chr3 (14-65)||(9794835-9794886)
chr3 (14-65)||(10284395-10284446)
chr3 (50-102)||(48921967-48922015)
[»] chr7 (2 HSPs)
chr7 (14-334)||(42541186-42541506)
chr7 (16-113)||(25594226-25594323)
[»] chr1 (2 HSPs)
chr1 (14-334)||(17649248-17649568)
chr1 (25-114)||(50225012-50225095)
[»] chr6 (3 HSPs)
chr6 (36-334)||(4745453-4745754)
chr6 (38-114)||(180931-181003)
chr6 (69-114)||(32058939-32058984)
[»] chr2 (4 HSPs)
chr2 (151-331)||(42238790-42238970)
chr2 (11-111)||(42238520-42238620)
chr2 (15-113)||(7016472-7016571)
chr2 (490-607)||(12251602-12251718)
[»] chr4 (3 HSPs)
chr4 (14-144)||(15496389-15496519)
chr4 (11-63)||(24177799-24177851)
chr4 (14-64)||(52575937-52575987)
[»] chr5 (2 HSPs)
chr5 (490-663)||(42120001-42120173)
chr5 (14-65)||(9978224-9978275)
[»] chr8 (1 HSPs)
chr8 (14-65)||(10636747-10636798)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 1328049 - 1328369
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
1328049 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc 1328148  T
114 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
1328149 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaataggaaatagagattgttatgtttgatgaagaccaaccacaagaa 1328248  T
214 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1328249 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 1328348  T
314 atgtatttcttctttatttaa 334  Q
    |||||||||||||||||||||    
1328349 atgtatttcttctttatttaa 1328369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 330 - 679
Target Start/End: Complemental strand, 8529046 - 8528696
Alignment:
330 tttaagggaaaaactataaacgatgttatgtattaaagacaataaagttaataataaatttataagtttcgaatagatttcctaaannnnnnnataaaag 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||       |||||||    
8529046 tttaagggaaaaactataaacgatgttatgtattaaagacaataaagttaataataaatttataagtttcaaaccgatttcctaaaataatttataaaag 8528947  T
430 tccactgaggtatgtatcgatgtgtattacaaaatnnnnnnnnttatgaccgaccctacgatattttatgttgacagacattctccagccattagatccc 529  Q
    ||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
8528946 tccactgaggtatgtatcgatgtgtataacaaaataaaaaaaattatgaccgaccctacgatattttatgttgatagacattctccagccattagatccc 8528847  T
530 aatagaaatattaaacaattatattcaacgaaaatgaccattgtcaccaagaaaagatcatcaaaactgaatattgtattgtcaatttatgttccgttcc 629  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
8528846 aatagaaatattaaacaattatattgaacgaaaatgaccactgtcaccaagaaaagaccatcaaaactgaatattgtattgtcaatttatgttccgttcc 8528747  T
630 acacactttcaaat-ttttatccttttgttctttttccaatttcttatgcc 679  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
8528746 acacactttcaaattttttatccttttgttctttttccaatttcttatgcc 8528696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 9794886 - 9794835
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 65  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
9794886 aatatataaacatatagagaactaaatatattcttcatgaaaaattatagga 9794835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 10284395 - 10284446
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 65  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
10284395 aatatataaacatatagaggactaaacatattcttcatgaaaaattatagga 10284446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 48922015 - 48921967
Alignment:
50 atgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatc 102  Q
    |||||||||||||||||||||| ||||||||   |||||||||||||||||||    
48922015 atgaaaaattataggaagccat-gaaccacc---taacatagatttaaacatc 48921967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 42541506 - 42541186
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
42541506 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc 42541407  T
114 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
42541406 tgaatgtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatatagattgttatgtttgatgaagaccaaccacaagaa 42541307  T
214 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42541306 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 42541207  T
314 atgtatttcttctttatttaa 334  Q
    |||||||||||||||||||||    
42541206 atgtatttcttctttatttaa 42541186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 25594323 - 25594226
Alignment:
16 tatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 113  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
25594323 tatatatacatataaagaactaaacatattcttcatgaaaaattataggaagccatgaaaccacctcttaacatagatttaaacatctcttttaatcc 25594226  T

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Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 17649248 - 17649568
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 113  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
17649248 aatatataaacatatagagaactaaacatattcttcatgaaatattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc 17649347  T
114 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17649348 tgaaagtgaagaggaaacagataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 17649447  T
214 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
17649448 gtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggta 17649547  T
314 atgtatttcttctttatttaa 334  Q
    |||||||||||||||||||||    
17649548 atgtatttcttctttatttaa 17649568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 50225012 - 50225095
Alignment:
25 atatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcct 114  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||      | | |||||||||||||||||||||| |||||||    
50225012 atatagaaaactaaacatattcttcatgaaaaattataggaagccatgga------tttaaacatagatttaaacatcccttttaatcct 50225095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 36 - 334
Target Start/End: Original strand, 4745453 - 4745754
Alignment:
36 taaacatattcttcatgaaaaattataggaagccatggaaccacctcttaa---catagatttaaacatcccttataatcctgaaagtgaagaggaaaca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||    
4745453 taaacatattcttcatgaaaaattataggaagccatggaaccacctcttaataacatagatttaaacatcccttttaatcctgaaagtgaagaggaaaca 4745552  T
133 aataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattg 232  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4745553 gataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattg 4745652  T
233 cagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttattt 332  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4745653 cagatatagagtatgactttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttattt 4745752  T
333 aa 334  Q
    ||    
4745753 aa 4745754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 181003 - 180931
Alignment:
38 aacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcct 114  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||   |||||||||||||||||||| || |||||||    
181003 aacatattcttcatgaaatattataggaagtcat-gaaccacc---taacatagatttaaacatccattttaatcct 180931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 32058939 - 32058984
Alignment:
69 catggaaccacctcttaacatagatttaaacatcccttataatcct 114  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||    
32058939 catgaaaccccctcttaacatagatttaaacatccattttaatcct 32058984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 151 - 331
Target Start/End: Original strand, 42238790 - 42238970
Alignment:
151 tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgact 250  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
42238790 tatgtggaagaaagtgaagaggaaatagagattgttatgtttgacgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgact 42238889  T
251 ttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatt 331  Q
    ||||||| ||||||||||  ||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||    
42238890 ttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttatt 42238970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 42238520 - 42238620
Alignment:
11 aagaatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataa 110  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
42238520 aagagtatatatacatatagagaactaaacatattcttcatgaaaaattataggaagccatggaaccccctcttaacatagatttaaacatcccttttaa 42238619  T
111 t 111  Q
    |    
42238620 t 42238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 7016571 - 7016472
Alignment:
15 atatataaacatatagagaattaaacatattcttcatgaaaaa-ttataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 113  Q
    ||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||| | ||| |||||||||||||||||||||| ||||||    
7016571 atatatacacatatagagaactaaacatattcttcataaaaaaattataggaatccatggaaccccatctcaacatagatttaaacatcccttttaatcc 7016472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 607
Target Start/End: Complemental strand, 12251718 - 12251602
Alignment:
490 atattttatgttgacagacattctccagccattagatcccaatagaaatattaaacaattatattcaacgaaaatgaccattgtc-accaagaaaagatc 588  Q
    ||||||||||| || |||||||||||| |||| |||| | |||||||||| ||| |||||||||| || ||| |||||||||| | |||||| ||||| |    
12251718 atattttatgtggatagacattctccatccat-agattcaaatagaaatagtaa-caattatattgaatgaacatgaccattggccaccaagcaaagacc 12251621  T
589 atcaaaactgaatattgta 607  Q
    |||||| ||||||||||||    
12251620 atcaaacctgaatattgta 12251602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 15496519 - 15496389
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
15496519 aatatataaacatatagagaactaaacatattcttcatgaaaaattataggaagccatggaaccacctctttacatagatttaaacatcccttttaatcc 15496420  T
114 tgaaagtgaagaggaaacaaataatgatcct 144  Q
    ||||||||||||||||||| |||||||||||    
15496419 tgaaagtgaagaggaaacatataatgatcct 15496389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 24177799 - 24177851
Alignment:
11 aagaatatataaacatatagagaattaaacatattcttcatgaaaaattatag 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||    
24177799 aagagtatataaacatatagagaattaaacatattcttcatgaaagattatag 24177851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 52575987 - 52575937
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagg 64  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||    
52575987 aatatataaatatatagagaactaaacatattcttcatgaaaaattatagg 52575937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 490 - 663
Target Start/End: Complemental strand, 42120173 - 42120001
Alignment:
490 atattttatgttgacagacattctccagccattagatcccaatagaaatattaaacaattatattcaacgaaaatgaccatt-gtcaccaagaaaagatc 588  Q
    ||||||||||| || |||||||||| |||| ||| || ||||||||||||| ||||||||||||| || |||||| |||||| ||||||||| | ||| |    
42120173 atattttatgtggatagacattctctagcctttaaattccaatagaaatatcaaacaattatattgaatgaaaatcaccattggtcaccaagcatagacc 42120074  T
589 atcaaaactgaatattgtattgtcaatttatgttccgttccacacactttcaaatttttatccttttgttctttt 663  Q
    ||||||||| |  |||||||| |||||||| | |  |||||  |||||||| ||||||  |||||||||||||||    
42120073 atcaaaactta--attgtattttcaatttacgctgtgttccttacactttccaattttcgtccttttgttctttt 42120001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 9978275 - 9978224
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
9978275 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 9978224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 10636798 - 10636747
Alignment:
14 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 65  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
10636798 aatatataaacatatagagtactaaacatattcttcatgaaaaattatagga 10636747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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