View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_73 (Length: 341)
Name: NF19175_high_73
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_73 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 44547005 - 44547333
Alignment:
| Q |
13 |
aatatccaatggcatatgcttgcagttctcaacaagttcccagaaaattgttaccaaggcattttcctcaacaacccaacatgaacctacatcatggata |
112 |
Q |
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| T |
44547005 |
aatatccaatggcatatgcttgcagttctcaacaagttcccagaaaattgttaccaaggcattttcctcaacaacccaacatgaacctacatcatggata |
44547104 |
T |
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| Q |
113 |
tgcaacatgggagcaacaacttccaagtgaatgttatatagctgatcacgcagttggtcttggaagcttgacagcgaataatagtaatgcaatgcttcag |
212 |
Q |
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| T |
44547105 |
tgcaacatgggagcaacaacttccaagtgaatattatatagctgatcacgcagttggtcttggaagcttgacagcgaataatagtaatgcaatgcttcag |
44547204 |
T |
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| Q |
213 |
caggaagaagatattaataatcaacaacaatcaccaatgcatgttcctcatatgaataatgcagttaatgatggtgtaccgagtgtggacaacatcgtgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44547205 |
caggaagaagatattaataatcaacaacaatcaccaatgcatgttcctcatatgaataatgcagttaatgatggtgtatcgagtgtggacaacatcgtgg |
44547304 |
T |
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| Q |
313 |
aagtgaataatactgtaacagatttcggt |
341 |
Q |
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| T |
44547305 |
aagtgaataatactataacagatttcggt |
44547333 |
T |
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