View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_79 (Length: 324)
Name: NF19175_high_79
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_79 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 35441463 - 35441170
Alignment:
| Q |
16 |
acaacttgaatacactaataatttgtgtacatcttgaagtttgtagatgttaaagattttacataacagatctataattataaaaggaactaaaatgacc |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35441463 |
acaacttgaatacactaataatttatgtacatcttgaagtttgtagatgttaaagattttacataacagatctataattataaaaggaactaaaatgacc |
35441364 |
T |
|
| Q |
116 |
attttatgcataaaccacagggatacaaatgcagtaatccagcttcagaagtcatcttctgactggctggaacatgtagagtctaacttattggacagaa |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
35441363 |
attttatgcataaaccatagggatacaaatgcagtaatccagcttcagaagtcatcttctgactggctggaacatgtagagtctaactgattggatagaa |
35441264 |
T |
|
| Q |
216 |
aatttaaatcaaggttacggaatctcagtggcattatctttgatggagacaaaggtggtgttgttgatgcagactcgactcctacattcttctt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35441263 |
aatttaaatcaaggttacggaatctcagtggcactatctttgatggagacaaaggtggtgttgttgatgcagactcaactcctacattcttctt |
35441170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University