View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_83 (Length: 303)
Name: NF19175_high_83
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_83 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 42937088 - 42936792
Alignment:
| Q |
5 |
caatccatgcaattcattcatctttatatattttcaaacaaccattttcaacctctaacacac--------------tcttatatctcaacttccattat |
90 |
Q |
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| T |
42937088 |
caatccatgcaattcattcatctt-atatattttcaaacaaccattttcaacctctaacacacacacacacacacactcttatatctcaacttccattat |
42936990 |
T |
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| Q |
91 |
ttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacgagattggcgccggtaacagcgccgtcgtc |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936989 |
ttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacgagattggcgccggtaacagcgccgtcgtc |
42936890 |
T |
|
| Q |
191 |
tacaaagcaatctgcatccctataaactccacaccagtagctatcaaaaccacagacttggctcgttcgcgccccgtccttgacgatgttagacgtga |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
42936889 |
tacaaagcaatctgcatccctataaactccacaccagtagctatcaaatccatagacttggatcgttcgcgccccgaccttgacgatgttagacgtga |
42936792 |
T |
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