View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_high_86 (Length: 295)

Name: NF19175_high_86
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_high_86
NF19175_high_86
[»] chr1 (1 HSPs)
chr1 (1-280)||(5130838-5131118)
[»] chr7 (3 HSPs)
chr7 (127-245)||(48361643-48361764)
chr7 (196-245)||(35780079-35780128)
chr7 (127-159)||(35780022-35780054)
[»] chr4 (1 HSPs)
chr4 (185-244)||(9443353-9443412)
[»] chr5 (12 HSPs)
chr5 (185-245)||(1600091-1600151)
chr5 (188-245)||(2844854-2844911)
chr5 (188-245)||(2856681-2856738)
chr5 (188-245)||(2874291-2874348)
chr5 (122-244)||(8529132-8529251)
chr5 (185-241)||(8641635-8641691)
chr5 (185-245)||(9074517-9074577)
chr5 (98-245)||(8644377-8644524)
chr5 (196-245)||(2904797-2904846)
chr5 (185-245)||(8547897-8547957)
chr5 (122-159)||(8535690-8535727)
chr5 (127-159)||(1600180-1600212)
[»] scaffold0627 (1 HSPs)
scaffold0627 (127-159)||(4841-4873)
[»] chr6 (1 HSPs)
chr6 (123-159)||(16716536-16716572)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 5130838 - 5131118
Alignment:
Q  1 tcttcaaagtgttttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130838 tcttcaaagtgttttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgc 5130937  T
Q  101 aacattatggaaagaacatgcatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaaatgattatgattttcaaac 200  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5130938 aacattatggaaagaacacgcatcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaac 5131037  T
Q  201 acatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctttttccaagatcatat 280  Q
    || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  5131038 acgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatat 5131118  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 48361764 - 48361643
Alignment:
Q  127 aaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaa---atgattatgattttcaaacacatgtggaggagaagggaatga 223  Q
    |||||||||| ||||||||||||||||||||||  ||||||  | | |||  ||    || |||||||||| |||||||||||||||||||||| |||||    
T  48361764 aaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatga 48361665  T
Q  224 ttgcaatctctcactttcaaaa 245  Q
     ||||  |||||||||||||||    
T  48361664 ctgcaccctctcactttcaaaa 48361643  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 35780079 - 35780128
Alignment:
Q  196 caaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    |||||||||||||||||||||| ||||  ||||| ||||||| |||||||    
T  35780079 caaacacatgtggaggagaaggaaatggctgcaacctctcaccttcaaaa 35780128  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 35780022 - 35780054
Alignment:
Q  127 aaatgtaaagcaatccctttaattctcccatgc 159  Q
    |||||||||| ||||||||||||||||||||||    
T  35780022 aaatgtaaagaaatccctttaattctcccatgc 35780054  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 9443353 - 9443412
Alignment:
Q  185 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaa 244  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  9443353 attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaa 9443412  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 1600151 - 1600091
Alignment:
Q  185 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||    
T  1600151 attatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttcaaaa 1600091  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 2844911 - 2844854
Alignment:
Q  188 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2844911 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2844854  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 2856738 - 2856681
Alignment:
Q  188 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2856738 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2856681  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 2874348 - 2874291
Alignment:
Q  188 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2874348 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2874291  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 8529132 - 8529251
Alignment:
Q  122 atcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaaatgattatgattttcaaacacatgtggaggagaagggaat 221  Q
    |||| ||||||| || ||||||||||||||||||||||  ||| ||    | | | |||||  |||||||||| |||||||||||||||||||||| ||     
T  8529132 atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaac 8529228  T
Q  222 gattgcaatctctcactttcaaa 244  Q
    || ||||| |||||| |||||||    
T  8529229 gactgcaacctctcattttcaaa 8529251  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 8641635 - 8641691
Alignment:
Q  185 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttc 241  Q
    |||||||||| |||||||||||||||||||||| ||| | | |||||||||||||||    
T  8641635 attatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttc 8641691  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 9074577 - 9074517
Alignment:
Q  185 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    |||||| ||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  9074577 attatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaa 9074517  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 8644377 - 8644524
Alignment:
Q  98 tgcaacattatggaaagaacatgcatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaa---atgattatgattt 194  Q
    |||||||| | | |||||| ||| |||  |||||||||| |||||| |||||||||||||||  ||| ||||| | | |  |||   || ||| ||||||    
T  8644377 tgcaacatcacgaaaagaatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattt 8644476  T
Q  195 tcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    | ||||||   |||||||||||| ||||||||||| |||||||||||||||    
T  8644477 tgaaacac---tggaggagaaggaaatgattgcaacctctcactttcaaaa 8644524  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 2904846 - 2904797
Alignment:
Q  196 caaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||||    
T  2904846 caaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaa 2904797  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 8547957 - 8547897
Alignment:
Q  185 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 245  Q
    |||||||||||||||||||  || ||||||||| |||||||| || ||||| |||||||||    
T  8547957 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaa 8547897  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 8535690 - 8535727
Alignment:
Q  122 atcagaaatgtaaagcaatccctttaattctcccatgc 159  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  8535690 atcacaaatgtaaagaaatccctttaattctcccatgc 8535727  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 1600212 - 1600180
Alignment:
Q  127 aaatgtaaagcaatccctttaattctcccatgc 159  Q
    |||||||||| ||||||||||||||||||||||    
T  1600212 aaatgtaaagaaatccctttaattctcccatgc 1600180  T

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Target: scaffold0627 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 4841 - 4873
Alignment:
Q  127 aaatgtaaagcaatccctttaattctcccatgc 159  Q
    |||||||||| ||||||||||||||||||||||    
T  4841 aaatgtaaagaaatccctttaattctcccatgc 4873  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 16716536 - 16716572
Alignment:
Q  123 tcagaaatgtaaagcaatccctttaattctcccatgc 159  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16716536 tcagaaatgtatagaaatccctttaattctcccatgc 16716572  T

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