View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_high_90 (Length: 283)
Name: NF19175_high_90
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 230022 - 230139
Alignment:
| Q |
6 |
agtagcatagggaggagagaatggtggaggtgaggcagggggtggtgatgcaggtggtggagtagactgaacaggtggaggagtgagtggggttggagga |
105 |
Q |
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| T |
230022 |
agtagcagggggaggagagaatggtggaggtgaggcagggggtggtgatgcaggtggtggagtagactgaacaggtggaggagtgagtggggttggagga |
230121 |
T |
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| Q |
106 |
ggagattgctgaacaggt |
123 |
Q |
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|||||||||||||||||| |
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| T |
230122 |
ggagattgctgaacaggt |
230139 |
T |
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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 230220 - 230281
Alignment:
| Q |
204 |
gggtggaggagaagattgaacaggtggaggggaggcttgaggagtggttgggggtgtattag |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230220 |
gggtggaggagaagattgaacaggtggaggggaggcttgaggagtggttgggggtgtattag |
230281 |
T |
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