View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19175_high_93 (Length: 279)
Name: NF19175_high_93
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_high_93 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 26735389 - 26735144
Alignment:
| Q |
11 |
cataggctaggatttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735389 |
cataggctaggatttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcg |
26735290 |
T |
|
| Q |
111 |
tcgttagactcgtcatgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735289 |
tcgttagactcgtcatgaatctaatctcatcagggattttcccagatatgctattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccc |
26735190 |
T |
|
| Q |
211 |
tttaggaacctcaccggtaagcatgtttcggctgaagtcaactgca |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735189 |
tttaggaacctcaccggtaagcatgtttcggctgaagtcaactgca |
26735144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 26727075 - 26726834
Alignment:
| Q |
11 |
cataggctaggatttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcg |
110 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26727075 |
cataagctagggtttcccgcaaatgaacggtcgttgaagaccaaaaactgaccaccggtggggacaattccggtgaaattgttgtaagataaatccagcg |
26726976 |
T |
|
| Q |
111 |
tcgttagactcgtcatgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccc |
210 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||| ||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
26726975 |
tcgttagactcatcatgaatctaatatcattggggatttgccccgatatgctattatgcgaaacattcaaaatgtttagcaccttcagattcttcatccc |
26726876 |
T |
|
| Q |
211 |
tttaggaacctcaccggtaagcatgtttcggctgaagtcaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26726875 |
tttaggaacctcaccggtaagcatgtttaggctgaagtcaac |
26726834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University