View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_101 (Length: 271)

Name: NF19175_low_101
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_101
NF19175_low_101
[»] chr4 (10 HSPs)
chr4 (16-252)||(29440499-29440745)
chr4 (16-228)||(29444179-29444392)
chr4 (7-124)||(29253767-29253884)
chr4 (188-246)||(44431645-44431703)
chr4 (189-246)||(5496211-5496268)
chr4 (189-228)||(5611509-5611548)
chr4 (195-228)||(41189587-41189620)
chr4 (194-228)||(24702390-24702424)
chr4 (206-246)||(11674822-11674862)
chr4 (206-246)||(11683101-11683141)
[»] chr8 (3 HSPs)
chr8 (189-252)||(43854059-43854122)
chr8 (189-246)||(35049115-35049172)
chr8 (189-248)||(43855006-43855065)
[»] scaffold0444 (1 HSPs)
scaffold0444 (188-246)||(6906-6964)
[»] chr2 (3 HSPs)
chr2 (194-239)||(36874806-36874851)
chr2 (194-246)||(5375556-5375608)
chr2 (194-228)||(43323718-43323752)
[»] chr5 (4 HSPs)
chr5 (194-246)||(9821395-9821447)
chr5 (191-230)||(19967167-19967206)
chr5 (194-228)||(5708120-5708154)
chr5 (196-228)||(8933951-8933983)
[»] scaffold0102 (1 HSPs)
scaffold0102 (194-228)||(14429-14463)
[»] chr7 (4 HSPs)
chr7 (194-228)||(8224847-8224881)
chr7 (194-228)||(24823073-24823107)
chr7 (197-228)||(18264619-18264650)
chr7 (194-227)||(35949474-35949507)
[»] chr3 (1 HSPs)
chr3 (194-228)||(53043316-53043350)
[»] chr1 (2 HSPs)
chr1 (194-228)||(25244983-25245017)
chr1 (194-228)||(25275089-25275123)
[»] chr6 (1 HSPs)
chr6 (189-228)||(26857961-26858000)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 29440745 - 29440499
Alignment:
Q  16 atattattgaaaaagtgagaatattt-aatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtccctaatgaag 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29440745 atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag 29440646  T
Q  115 acattcaatcgatatgcccttgttgggaataaaatactccaaagatgtgaattttaagtacgttgttgttgggaattaagggtggcaatatgatccatga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  29440645 acattcaatcgatatgcccttgttgggaataaaatactccaaagatgtgaattttaagtacgttgttgttgggaatcaggggtggcaatatgatcaatga 29440546  T
Q  215 gatccat---------atccatctactacaaaattcatccatcaaac 252  Q
    |||| ||         || ||||||||||||||||||||||||||||    
T  29440545 gatcaatattcatccaattcatctactacaaaattcatccatcaaac 29440499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 29444392 - 29444179
Alignment:
Q  16 atattattgaaaaagtgagaatattt-aatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtccctaatgaag 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29444392 atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag 29444293  T
Q  115 acattcaatcgatatgcccttgttgggaataaaatactccaaagatgtgaattttaagtacgttgttgttgggaattaagggtggcaatatgatccatga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  29444292 acattcaatcgatatgcccttgttgggaataaaatactccaaagatgtgaattttaagtacgttgttgttgggaattaggggtgacaatatgatcaatga 29444193  T
Q  215 gatccatatccatc 228  Q
    |||| |||| ||||    
T  29444192 gatcaatattcatc 29444179  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 29253884 - 29253767
Alignment:
Q  7 tcgaagaatatattattgaaaaagtgagaatatttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtccc 106  Q
    ||||| || |||||||| | ||| ||||||||| |||||||||||||||||| ||| | |||| | ||||  ||   ||||||||| |||||||||||||    
T  29253884 tcgaacaaaatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc 29253785  T
Q  107 taatgaagacattcaatc 124  Q
    ||||||||||||||||||    
T  29253784 taatgaagacattcaatc 29253767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 44431645 - 44431703
Alignment:
Q  188 aattaagggtggcaatatgatccatgagatccatatccatctactacaaaattcatcca 246  Q
    ||||| |||||||||||||||  ||||||| |||||||||| |||||||||||||||||    
T  44431645 aattaggggtggcaatatgattaatgagattcatatccatccactacaaaattcatcca 44431703  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 5496268 - 5496211
Alignment:
Q  189 attaagggtggcaatatgatccatgagatccatatccatctactacaaaattcatcca 246  Q
    |||| |||| ||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  5496268 attaggggtagcaatatgatccatgagatccatattcatccactacaaaatccatcca 5496211  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 5611548 - 5611509
Alignment:
Q  189 attaagggtggcaatatgatccatgagatccatatccatc 228  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  5611548 attaggggtggcaatatgatccatgagatccatatccatc 5611509  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 41189587 - 41189620
Alignment:
Q  195 ggtggcaatatgatccatgagatccatatccatc 228  Q
    ||||||||||||||||||||||||||||||||||    
T  41189587 ggtggcaatatgatccatgagatccatatccatc 41189620  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 24702390 - 24702424
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    ||||||||||| |||||||||||||||||||||||    
T  24702390 gggtggcaataggatccatgagatccatatccatc 24702424  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 11674862 - 11674822
Alignment:
Q  206 gatccatgagatccatatccatctactacaaaattcatcca 246  Q
    ||||||||||||||||||||||| | |||||||| ||||||    
T  11674862 gatccatgagatccatatccatccaatacaaaatccatcca 11674822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 11683141 - 11683101
Alignment:
Q  206 gatccatgagatccatatccatctactacaaaattcatcca 246  Q
    ||||||||||||||||||||||| | |||||||| ||||||    
T  11683141 gatccatgagatccatatccatccaatacaaaatccatcca 11683101  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 43854059 - 43854122
Alignment:
Q  189 attaagggtggcaatatgatccatgagatccatatccatctactacaaaattcatccatcaaac 252  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||    
T  43854059 attaagggtgacaatataatctatgagatccatatccatctactataaaattcattcatcaaac 43854122  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 35049172 - 35049115
Alignment:
Q  189 attaagggtggcaatatgatccatgagatccatatccatctactacaaaattcatcca 246  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  35049172 attaggggtggcaatatgatccataagatccatatccatccactacaaaatccatcca 35049115  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 43855006 - 43855065
Alignment:
Q  189 attaagggtggcaatatgatccatgagatccatatccatctactacaaaattcatccatc 248  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||    
T  43855006 attaggggtggcaaaatgatctatgagatccatatccatctactataaaattcattcatc 43855065  T

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Target: scaffold0444 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 6906 - 6964
Alignment:
Q  188 aattaagggtggcaatatgatccatgagatccatatccatctactacaaaattcatcca 246  Q
    ||||| |||||||||||||||  ||||||| |||||||||| |||||||||||||||||    
T  6906 aattaggggtggcaatatgattaatgagattcatatccatccactacaaaattcatcca 6964  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 36874806 - 36874851
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatctactacaaaat 239  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  36874806 gggtgacaatatgatccatgagatccatatccatccactacaaaat 36874851  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 5375556 - 5375608
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatctactacaaaattcatcca 246  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  5375556 gggtgacaatatgatccatgagatccatatccatccaatacaaaatccatcca 5375608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 43323718 - 43323752
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    ||||||||||||||||||||||||| |||||||||    
T  43323718 gggtggcaatatgatccatgagatctatatccatc 43323752  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 9821395 - 9821447
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatctactacaaaattcatcca 246  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  9821395 gggtgccaatatgatccatgagatccatatccatccactataaaatccatcca 9821447  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 19967206 - 19967167
Alignment:
Q  191 taagggtggcaatatgatccatgagatccatatccatcta 230  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  19967206 taagggtggcaatatgatacatgagatccatatccatcta 19967167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 5708120 - 5708154
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||||||||||    
T  5708120 gggtggcaatatgatccatgagatccatatccatc 5708154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 8933983 - 8933951
Alignment:
Q  196 gtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||| ||||    
T  8933983 gtggcaatatgatccatgagatccatattcatc 8933951  T

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Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 14463 - 14429
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||||||||||    
T  14463 gggtggcaatatgatccatgagatccatatccatc 14429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 8224847 - 8224881
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||||||||||    
T  8224847 gggtggcaatatgatccatgagatccatatccatc 8224881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 24823107 - 24823073
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||||||||||    
T  24823107 gggtggcaatatgatccatgagatccatatccatc 24823073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 18264650 - 18264619
Alignment:
Q  197 tggcaatatgatccatgagatccatatccatc 228  Q
    ||||||||||||||||||||||||||||||||    
T  18264650 tggcaatatgatccatgagatccatatccatc 18264619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 35949474 - 35949507
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccat 227  Q
    |||||||||||||||||||||||| |||||||||    
T  35949474 gggtggcaatatgatccatgagattcatatccat 35949507  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 53043350 - 53043316
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||||||||||    
T  53043350 gggtggcaatatgatccatgagatccatatccatc 53043316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 25244983 - 25245017
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||||||||||||||    
T  25244983 gggtggcaatatgatccatgagatccatatccatc 25245017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 25275089 - 25275123
Alignment:
Q  194 gggtggcaatatgatccatgagatccatatccatc 228  Q
    |||||||||||||||||||||||| ||||||||||    
T  25275089 gggtggcaatatgatccatgagattcatatccatc 25275123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 26857961 - 26858000
Alignment:
Q  189 attaagggtggcaatatgatccatgagatccatatccatc 228  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  26857961 attaggggtggcaatatgatccatgagatccatattcatc 26858000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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