View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_102 (Length: 271)

Name: NF19175_low_102
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_102
NF19175_low_102
[»] chr3 (2 HSPs)
chr3 (17-235)||(48228373-48228590)
chr3 (181-222)||(29862403-29862444)
[»] chr2 (3 HSPs)
chr2 (151-218)||(8588694-8588762)
chr2 (180-225)||(19161286-19161331)
chr2 (151-225)||(9684845-9684920)
[»] chr8 (3 HSPs)
chr8 (35-101)||(4700383-4700449)
chr8 (151-232)||(139897-139979)
chr8 (29-101)||(24125770-24125842)
[»] chr6 (3 HSPs)
chr6 (29-101)||(10402471-10402543)
chr6 (151-218)||(34305106-34305174)
chr6 (29-101)||(34305240-34305312)
[»] chr1 (5 HSPs)
chr1 (29-101)||(7435089-7435161)
chr1 (151-222)||(38732188-38732260)
chr1 (151-225)||(19036029-19036104)
chr1 (150-211)||(972268-972329)
chr1 (17-101)||(7794198-7794282)
[»] chr7 (1 HSPs)
chr7 (29-96)||(47679867-47679934)
[»] chr4 (3 HSPs)
chr4 (181-218)||(23809160-23809197)
chr4 (151-235)||(53171090-53171175)
chr4 (17-101)||(53171241-53171325)
[»] scaffold0186 (1 HSPs)
scaffold0186 (151-218)||(20334-20402)
[»] chr5 (2 HSPs)
chr5 (29-101)||(15291315-15291387)
chr5 (181-225)||(15291484-15291528)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 48228373 - 48228590
Alignment:
Q  17 aatcttaggtgttacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtctcaaatggtacaattc 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48228373 aatcttaggtgttataaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtctcaa-tggtacaattc 48228471  T
Q  117 aaaattttggtattagcagttttattagcaaggacacaacatgttttggcgagtgtccattgaataaaaatgttcaagatatagaagtgaagtttgacat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48228472 aaaattttggtattagcagttttattagcaaggacacaacatgttttggcgagtgtccattgaataaaaatgttcaagatatagaagtgaagtttgacat 48228571  T
Q  217 gatcacgagctagaaaaca 235  Q
     ||||||||||||||||||    
T  48228572 aatcacgagctagaaaaca 48228590  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 29862444 - 29862403
Alignment:
Q  181 taaaaatgttcaagatatagaagtgaagtttgacatgatcac 222  Q
    ||||| |||||||||||| ||||| |||||||||||||||||    
T  29862444 taaaagtgttcaagatatggaagttaagtttgacatgatcac 29862403  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 8588762 - 8588694
Alignment:
Q  151 cacaacatgttttggcgagtgtccattg-aataaaaatgttcaagatatagaagtgaagtttgacatga 218  Q
    |||||||||||||||||||||||| ||  ||||||| |||||||||||| ||||| |||||||||||||    
T  8588762 cacaacatgttttggcgagtgtcctttttaataaaagtgttcaagatatggaagtcaagtttgacatga 8588694  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 19161286 - 19161331
Alignment:
Q  180 ataaaaatgttcaagatatagaagtgaagtttgacatgatcacgag 225  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  19161286 ataaaaatgttcaagatatggaagttaagtttgacatgatcacgag 19161331  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 9684845 - 9684920
Alignment:
Q  151 cacaacatgttttggcgagtg-tccattgaataaaaatgttcaagatatagaagtgaagtttgacatgatcacgag 225  Q
    ||||||||||||||| ||||| ||  || ||||||| |||||| ||||| ||||| ||||||||||||| ||||||    
T  9684845 cacaacatgttttggtgagtgctctttttaataaaagtgttcaggatatggaagttaagtttgacatgaccacgag 9684920  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 4700449 - 4700383
Alignment:
Q  35 atcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    |||||| ||||||| |||||||||||| | ||||| |||||||||||||||||| ||||||| ||||    
T  4700449 atcatactttgagagatagtgggataagtggtatgaactctgattttgacaatgctttggatggtct 4700383  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 139979 - 139897
Alignment:
Q  151 cacaacatgttttggcgagtgtccattgaa-taaaaatgttcaagatatagaagtgaagtttgacatgatcacgagctagaaa 232  Q
    ||||||||||||||| |||||||| ||  | || ||||||| | ||| | ||||||||||||||||||| |||||| ||||||    
T  139979 cacaacatgttttggtgagtgtcctttttagtagaaatgttaaggatgtggaagtgaagtttgacatgaccacgagatagaaa 139897  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 24125842 - 24125770
Alignment:
Q  29 tacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    ||||| |||||||||||||| | | ||||||| || ||||||||||  ||||||| |||| ||||||| ||||    
T  24125842 tacaagatcatattttgagagacaatgggatatatggtatggactcgaattttgaaaatgctttggatggtct 24125770  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 10402543 - 10402471
Alignment:
Q  29 tacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    ||||| |||||||||||||| |||||||||||  | |||||||||| |||||||| |||| ||||||| ||||    
T  10402543 tacaagatcatattttgagagatagtgggatatgtggtatggactcggattttgataatgctttggatggtct 10402471  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 34305174 - 34305106
Alignment:
Q  151 cacaacatgttttggcgagtg-tccattgaataaaaatgttcaagatatagaagtgaagtttgacatga 218  Q
    ||||||||||||||||||||| ||  || | ||||| |||||||||||| ||||| |||||||||||||    
T  34305174 cacaacatgttttggcgagtgctctttttagtaaaattgttcaagatatggaagttaagtttgacatga 34305106  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 34305312 - 34305240
Alignment:
Q  29 tacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    ||||| |||||||||||||| | |||||||||  | |||||||||| |||||||| |||| ||||||| ||||    
T  34305312 tacaagatcatattttgagagacagtgggatatgtggtatggactcagattttgataatgctttggatggtct 34305240  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 7435161 - 7435089
Alignment:
Q  29 tacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    ||||| |||||||||||||| | |||| ||||| |   |||||||||||||||||| ||||||||||| ||||    
T  7435161 tacaagatcatattttgagagacagtgagataactaacatggactctgattttgacgatgttttggatggtct 7435089  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 38732260 - 38732188
Alignment:
Q  151 cacaacatgttttggcgagtgtccattgaa-taaaaatgttcaagatatagaagtgaagtttgacatgatcac 222  Q
    ||||||| |||||| ||| ||||||||  | ||||| |||||||||||| ||||| |||||||||||||||||    
T  38732260 cacaacaagttttgacgattgtccattttagtaaaagtgttcaagatatggaagttaagtttgacatgatcac 38732188  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 19036104 - 19036029
Alignment:
Q  151 cacaacatgttttggcgagtg-tccattgaataaaaatgttcaagatatagaagtgaagtttgacatgatcacgag 225  Q
    ||||||||||||||||||||| ||  || | ||||| |||||| ||||| ||||| ||||||||||||| ||||||    
T  19036104 cacaacatgttttggcgagtgctctttttagtaaaagtgttcaggatatggaagttaagtttgacatgaccacgag 19036029  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 972329 - 972268
Alignment:
Q  150 acacaacatgttttggcgagtgtccattgaataaaaatgttcaagatatagaagtgaagttt 211  Q
    ||||||||||||||||||||||||| || | | ||| ||||||||||||  |||| ||||||    
T  972329 acacaacatgttttggcgagtgtccttttagtgaaagtgttcaagatatgaaagttaagttt 972268  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 7794198 - 7794282
Alignment:
Q  17 aatcttaggtgttacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    |||||| |||| ||||| |||||||| ||||| |||||||||||  |  ||| ||||  |||||||| |||||||||||| ||||    
T  7794198 aatcttgggtgctacaagatcatattatgagagatagtgggatatgtgatatagacttggattttgataatgttttggatggtct 7794282  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 47679934 - 47679867
Alignment:
Q  29 tacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggat 96  Q
    ||||| |||||||||||||| | |||| ||||  | |||||||||| |||||||| ||||||||||||    
T  47679934 tacaagatcatattttgagagacagtgtgatatgtcgtatggactcagattttgataatgttttggat 47679867  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 23809160 - 23809197
Alignment:
Q  181 taaaaatgttcaagatatagaagtgaagtttgacatga 218  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  23809160 taaaaatgttcaagatatggaagtgaaatttgacatga 23809197  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 53171175 - 53171090
Alignment:
Q  151 cacaacatgttttggcgagtg-tccattgaataaaaatgttcaagatatagaagtgaagtttgacatgatcacgagctagaaaaca 235  Q
    ||||||||||||||||||||| ||  || | ||||| ||||||| |||| ||||| ||||||||||| | ||||||  ||||||||    
T  53171175 cacaacatgttttggcgagtgctctttttagtaaaagtgttcaaaatatggaagttaagtttgacataaccacgagaaagaaaaca 53171090  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 53171325 - 53171241
Alignment:
Q  17 aatcttaggtgttacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    ||||||||||| ||||| |||||||||||||| | |||||| ||  | | ||| |||| |||||||| ||| |||||||| ||||    
T  53171325 aatcttaggtgctacaagatcatattttgagagacagtgggttatgtggcatgaactcggattttgataatattttggattgtct 53171241  T

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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 20402 - 20334
Alignment:
Q  151 cacaacatgttttggcgagtgtccattg-aataaaaatgttcaagatatagaagtgaagtttgacatga 218  Q
    |||||||||||||||||| || || ||  ||||||| ||||||||||||  |||| |||||||||||||    
T  20402 cacaacatgttttggcgaatgccctttttaataaaagtgttcaagatatgaaagttaagtttgacatga 20334  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 15291315 - 15291387
Alignment:
Q  29 tacaaaatcatattttgagaaatagtgggataaattgtatggactctgattttgacaatgttttggatagtct 101  Q
    ||||| |||||||||||||| | | || |||| || |||||||||| ||||| || |||||||||||| ||||    
T  15291315 tacaagatcatattttgagagacaatgagatatatggtatggactcggatttcgataatgttttggatggtct 15291387  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 15291484 - 15291528
Alignment:
Q  181 taaaaatgttcaagatatagaagtgaagtttgacatgatcacgag 225  Q
    ||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  15291484 taaaagtgttcaagatatggaagttaagtttgacatgaccacgag 15291528  T

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