View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_103 (Length: 270)
Name: NF19175_low_103
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 15053196 - 15053432
Alignment:
| Q |
19 |
gtagattgggtggttgttgtttaagtgagagttgcaacaggttttgcaggtggaagggtatagttgtttgtgcattggattctaccaattatacaaactg |
118 |
Q |
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| T |
15053196 |
gtagattgggtggttgttgtttaagtgagagttgcaacaggttttgcaggtggaagggtatagttgtttgtgcattggattctaccaattatacaaactg |
15053295 |
T |
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| Q |
119 |
acactttgaatttcgttgtccattggatctgccaattgcaggaagtagaacaacatcaagaaggcacatctagagctgttgttccaagcaattgatctac |
218 |
Q |
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| T |
15053296 |
acactttgaatttcgttgtccattggatctgccaattgcaggaagtagagcaacatcaagaaggcacatctagagctgttgttccaagcaattgatctac |
15053395 |
T |
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| Q |
219 |
tggtatttgcacatcctgtttttaattgattttctat |
255 |
Q |
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| T |
15053396 |
tggtatttgcacatcctgtttttaattgattttctat |
15053432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 15010385 - 15010498
Alignment:
| Q |
134 |
ttgtccattggatctgccaattgcaggaagtagaacaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatc |
233 |
Q |
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| T |
15010385 |
ttgtccattggatctgccaactgcaggaagtagagcagcatcaggaaggcacatctagagctgttgttccaagcagtagatctactggtatgtgtacatc |
15010484 |
T |
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| Q |
234 |
ctgtttttaattga |
247 |
Q |
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| T |
15010485 |
atgtttttaattga |
15010498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 14290369 - 14290488
Alignment:
| Q |
134 |
ttgtccattggatctgccaattgcaggaagtagaacaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatc |
233 |
Q |
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| T |
14290369 |
ttgtccaatggatctgcaacctgcaggaagtagagcaggatcaggaaggcacatctagagctaatgttccaagcactggatccactggtatttccacatc |
14290468 |
T |
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| Q |
234 |
ctgtttttaattgattttct |
253 |
Q |
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| T |
14290469 |
ctgtttttaattgattttct |
14290488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 15056292 - 15056173
Alignment:
| Q |
134 |
ttgtccattggatctgccaattgcaggaagtagaacaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatc |
233 |
Q |
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| T |
15056292 |
ttgtccaatggatttgccaactgcagggagtagagcggtatcaggaaggcacatctagagctgttgttccaagccgtagatctactggtatgtgtacatc |
15056193 |
T |
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| Q |
234 |
ctgtttttaattgattttct |
253 |
Q |
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||| |||||||||||||||| |
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| T |
15056192 |
ctgcttttaattgattttct |
15056173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 14742237 - 14742140
Alignment:
| Q |
156 |
gcaggaagtagaacaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatcctgtttttaattgattttct |
253 |
Q |
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| T |
14742237 |
gcaggaagtaaagcagcatcaggaaggcacatctggagcatttgatccaagcagtagatctactggtatgcacacatcctatttttaattgagtttct |
14742140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 14283041 - 14283142
Alignment:
| Q |
134 |
ttgtccattggatctgccaattgcaggaagtagaacaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatc |
233 |
Q |
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| T |
14283041 |
ttgtccaatgaatctgccaactgcaggaagtagagcacaatgaggaaggcacatct------gacgtttcaagcactggatctactggtatttgcacatc |
14283134 |
T |
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| Q |
234 |
ctgttttt |
241 |
Q |
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|||||||| |
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| T |
14283135 |
ctgttttt |
14283142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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