View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_108 (Length: 263)

Name: NF19175_low_108
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_108
NF19175_low_108
[»] chr5 (16 HSPs)
chr5 (147-262)||(39525640-39525755)
chr5 (121-219)||(6706258-6706356)
chr5 (121-217)||(35924645-35924740)
chr5 (136-217)||(28976686-28976767)
chr5 (121-217)||(14613536-14613632)
chr5 (120-201)||(10507636-10507717)
chr5 (163-204)||(10818875-10818916)
chr5 (99-152)||(30513861-30513914)
chr5 (99-152)||(30554201-30554254)
chr5 (164-211)||(8367146-8367193)
chr5 (164-205)||(4192001-4192042)
chr5 (120-152)||(12075931-12075963)
chr5 (178-217)||(35757980-35758019)
chr5 (163-204)||(8367030-8367071)
chr5 (120-152)||(14123047-14123079)
chr5 (162-198)||(20221226-20221262)
[»] chr2 (11 HSPs)
chr2 (120-217)||(37629608-37629704)
chr2 (119-194)||(37096667-37096742)
chr2 (91-155)||(4983987-4984051)
chr2 (133-204)||(41324981-41325052)
chr2 (129-206)||(39994519-39994597)
chr2 (120-152)||(25297319-25297351)
chr2 (164-206)||(28564273-28564315)
chr2 (164-217)||(24145212-24145265)
chr2 (90-155)||(41838143-41838207)
chr2 (120-152)||(13798850-13798882)
chr2 (164-204)||(22536990-22537030)
[»] chr4 (18 HSPs)
chr4 (86-217)||(53860773-53860903)
chr4 (102-201)||(4873056-4873155)
chr4 (120-217)||(25812250-25812340)
chr4 (164-220)||(54923066-54923122)
chr4 (120-217)||(31775266-31775363)
chr4 (126-211)||(51781508-51781592)
chr4 (164-204)||(53860895-53860935)
chr4 (172-217)||(54335420-54335465)
chr4 (160-204)||(2605468-2605512)
chr4 (163-195)||(3703693-3703725)
chr4 (163-215)||(4873161-4873213)
chr4 (136-204)||(5979785-5979853)
chr4 (171-215)||(34290731-34290775)
chr4 (121-196)||(21538915-21538990)
chr4 (91-152)||(24680790-24680851)
chr4 (164-204)||(21538850-21538890)
chr4 (164-196)||(48292348-48292380)
chr4 (164-204)||(54734331-54734371)
[»] scaffold0110 (2 HSPs)
scaffold0110 (120-217)||(11428-11525)
scaffold0110 (120-217)||(19165-19262)
[»] chr6 (4 HSPs)
chr6 (120-217)||(30351432-30351529)
chr6 (86-194)||(1317582-1317690)
chr6 (120-209)||(30015052-30015139)
chr6 (162-193)||(9039513-9039544)
[»] chr3 (5 HSPs)
chr3 (121-202)||(26452802-26452883)
chr3 (121-205)||(32609372-32609456)
chr3 (142-217)||(26452896-26452971)
chr3 (90-152)||(31070669-31070731)
chr3 (171-208)||(29722834-29722871)
[»] chr7 (7 HSPs)
chr7 (121-201)||(27866674-27866754)
chr7 (90-223)||(37701236-37701369)
chr7 (90-193)||(22555289-22555392)
chr7 (170-204)||(48073132-48073166)
chr7 (120-211)||(48073009-48073100)
chr7 (167-217)||(39933632-39933682)
chr7 (99-152)||(5617900-5617953)
[»] chr8 (4 HSPs)
chr8 (103-199)||(25939302-25939398)
chr8 (103-154)||(28798969-28799020)
chr8 (163-204)||(9040955-9040996)
chr8 (120-152)||(26423773-26423805)
[»] chr1 (9 HSPs)
chr1 (92-204)||(39065315-39065426)
chr1 (120-204)||(49632893-49632977)
chr1 (120-206)||(8258908-8258992)
chr1 (65-154)||(7003146-7003240)
chr1 (163-204)||(30018687-30018729)
chr1 (164-211)||(47059312-47059359)
chr1 (122-158)||(11985520-11985556)
chr1 (120-152)||(43856378-43856410)
chr1 (164-204)||(49632849-49632889)
[»] scaffold0197 (1 HSPs)
scaffold0197 (121-193)||(25983-26055)
[»] scaffold0258 (1 HSPs)
scaffold0258 (120-152)||(19321-19353)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 39525640 - 39525755
Alignment:
Q  147 taactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgtcgtgatatttctaacttcttctttcaa 246  Q
    |||||||||||| |||||||||| |||||| ||||| |||||| ||||||||| |||||||||||  ||| ||||||||||| |||||||||| ||||||    
T  39525640 taactatcgatggaatgtttttgatcattttcatgtatttttaagaaacaatgaatgtgagaaaagtaatcgtcgtgatattactaacttcttttttcaa 39525739  T
Q  247 tccaactcactgcggc 262  Q
    ||||||||||||||||    
T  39525740 tccaactcactgcggc 39525755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 6706356 - 6706258
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgt 219  Q
    |||| ||||||||||||| ||||||||||||| || || |||||||||||| |||| ||||||||| || ||||||||| |||||||||||||||||||    
T  6706356 ttttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgtgagaaaaacaattgt 6706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 35924645 - 35924740
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||||||||||||  ||||||||||||||| || | ||| |||||| |||||||| ||||| |||||||||||||||||||||||| |||||    
T  35924645 ttttctagttataagtcaatggtagttaactatcgctgga-tgtgtttggttatttccatatgtttctaggaaacaatggatgtgagaaaagcaatt 35924740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 28976686 - 28976767
Alignment:
Q  136 tcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    |||||||||||||||||||| |  |||||||||| |||||| ||||| ||| || ||||||||||||||||||||| |||||    
T  28976686 tcagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaatt 28976767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 14613632 - 14613536
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||||||||| |||| || | |||||| || || | |||||||||| |||| ||||||||| |||||||||||||||| ||||||| |||||    
T  14613632 ttttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaagcaatt 14613536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 10507636 - 10507717
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatgga 201  Q
    ||||||||||||||| | || |||||||||||| || || ||||||||| ||||||||||||| ||||||| ||| ||||||    
T  10507636 gttttctagttataaattagtggtagttaactaccgctgaaatgtttttagtcatttccatgtatttttagaaaataatgga 10507717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 10818875 - 10818916
Alignment:
Q  163 gtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgt 10818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 30513914 - 30513861
Alignment:
Q  99 agcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaacta 152  Q
    ||||||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  30513914 agcggtagttaactaccgtcagttttctagttataagtcagcggtagttaacta 30513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 30554254 - 30554201
Alignment:
Q  99 agcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaacta 152  Q
    ||||||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  30554254 agcggtagttaactaccgtcagttttctagttataagtcagcggtagttaacta 30554201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 8367146 - 8367193
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 211  Q
    ||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  8367146 ttttttgtcatttccatgtgtttttaggaaacaatgtatgtaagaaaa 8367193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 4192001 - 4192042
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgtg 205  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtg 4192042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 12075963 - 12075931
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    |||||||||||||||||||||||||||||||||    
T  12075963 gttttctagttataagtcagcggtagttaacta 12075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 35758019 - 35757980
Alignment:
Q  178 catgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  35758019 catgtgtttctaggaaacaatggatgtgagaaaagcaatt 35757980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 8367071 - 8367030
Alignment:
Q  163 gtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||||||||||| ||| |||| |||||||||||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgt 8367030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 14123079 - 14123047
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    |||||||||||||||| ||||||||||||||||    
T  14123079 gttttctagttataagccagcggtagttaacta 14123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 20221226 - 20221262
Alignment:
Q  162 tgtttttggtcatttccatgtgtttttaggaaacaat 198  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20221226 tgtttttggttatttctatgtgtttttaggaaacaat 20221262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 37629608 - 37629704
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||  |||||| |||| |||||    
T  37629608 gttttctagttataagtcagcggtagttaactatcgatg-aatgtttttggtcatttccatgtgtttttaagaagcaataaatgtgaaaaaagcaatt 37629704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 37096667 - 37096742
Alignment:
Q  119 cgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaa 194  Q
    |||||| ||||||||||||||||||||||||||| || ||  ||||||||| |||| ||||| ||||| |||||||    
T  37096667 cgttttttagttataagtcagcggtagttaactaccgttgagatgtttttgctcatctccatatgtttctaggaaa 37096742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 4983987 - 4984051
Alignment:
Q  91 aaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcg 155  Q
    ||||||| ||||||||||||| |||  |  |||||||||||||||| ||||||||||||||||||    
T  4983987 aaaaattcagcggtagttaactaccgtcgattttctagttataagttagcggtagttaactatcg 4984051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 41324981 - 41325052
Alignment:
Q  133 aagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||| | |||||||||| |  || |||||||||||| |||||||||||||| || ||||||||||||||    
T  41324981 aagtcagtgatagttaactaccattgaaatgtttttggttatttccatgtgtttctaagaaacaatggatgt 41325052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 39994519 - 39994597
Alignment:
Q  129 ttataagtcagcggtagttaactatcgatgtaatgtttttgg-tcatttccatgtgtttttaggaaacaatggatgtga 206  Q
    |||||||||| |||||||||||| | | || ||| ||||||| |||||||||||||||| ||| ||||||||| |||||    
T  39994519 ttataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatgggtgtga 39994597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 25297351 - 25297319
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    |||||||||||||||||||||||||||||||||    
T  25297351 gttttctagttataagtcagcggtagttaacta 25297319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 28564315 - 28564273
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgtga 206  Q
    |||||| |||||||||||||||||||||||||| || ||||||    
T  28564315 tttttgatcatttccatgtgtttttaggaaacattgaatgtga 28564273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 24145212 - 24145265
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||||||||||||||||| || |||| ||||||||| | || |||||||    
T  24145212 tttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 24145265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 41838143 - 41838207
Alignment:
Q  90 aaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcg 155  Q
    |||||||| ||||||||||||| | |  | |||||||||||||||||||| ||||||||| |||||    
T  41838143 aaaaaattcagcggtagttaactaacgtc-gttttctagttataagtcagtggtagttaattatcg 41838207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 13798882 - 13798850
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  13798882 gttttcgagttataagtcagcggtagttaacta 13798850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 22536990 - 22537030
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  22536990 tttttggtcatttccatgtatttctaggaaacgatggatgt 22537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 53860903 - 53860773
Alignment:
Q  86 gaccaaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtt 185  Q
    |||||||||||| || ||||||||||||||     ||||||||||||||||||||||| |||||||| || || | | ||||||||||||||||||||||    
T  53860903 gaccaaaaaattcagtggtagttaaccaccgctgattttctagttataagtcagcggtggttaactaccgttggatt-tttttggtcatttccatgtgtt 53860805  T
Q  186 tttaggaaacaatggatgtgagaaaaacaatt 217  Q
    | ||||||||| |||||||||||||| |||||    
T  53860804 tctaggaaacattggatgtgagaaaagcaatt 53860773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 4873155 - 4873056
Alignment:
Q  102 ggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatgga 201  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||| || || | |||||||| |||||||||||||||||||| ||| ||||||    
T  4873155 ggtagttaactaccatcagttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatgga 4873056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 25812340 - 25812250
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    |||||||||||||||  ||||||||||||||||        ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  25812340 gttttctagttataaaccagcggtagttaactac-------atgtttttgatcatttccatgtgtttctagaaaacaatggatgtgagaaaaacaatt 25812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 54923066 - 54923122
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgtc 220  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  54923066 tttttggtcatttccatgtgtctctaggaaacaatggatgtgagaaaagcaattgtc 54923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 31775363 - 31775266
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||| ||||||||||| || ||||||||||| ||| || ||| |||||  ||||||| |||| || ||| |||||||||||||||| ||||||||||    
T  31775363 gttttttagttataagttagtggtagttaactttcgttggaatttttttaatcatttctatgtattcttaagaaacaatggatgtgaaaaaaacaatt 31775266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 51781592 - 51781508
Alignment:
Q  126 tagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 211  Q
    ||||||||||||||||||| |||||||  | ||  |||||||||| |||||  |||||||||||||||||||||||||| ||||||    
T  51781592 tagttataagtcagcggtaattaactactgctgagatgtttttggccattta-atgtgtttttaggaaacaatggatgtaagaaaa 51781508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 53860895 - 53860935
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgt 53860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 54335465 - 54335420
Alignment:
Q  172 catttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||    
T  54335465 catttccatgtgtttctaagaaacaatggatgtgagaacaacaatt 54335420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 2605468 - 2605512
Alignment:
Q  160 aatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||    
T  2605468 aatgtttttgatcatttccatgtgtttctaggaaataatggatgt 2605512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 3703693 - 3703725
Alignment:
Q  163 gtttttggtcatttccatgtgtttttaggaaac 195  Q
    |||||||||||||||||||||||||||||||||    
T  3703693 gtttttggtcatttccatgtgtttttaggaaac 3703725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 4873161 - 4873213
Alignment:
Q  163 gtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaa 215  Q
    |||||| ||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  4873161 gtttttagtcattttcatgtgtttttaggaaagaatggatgtcaaaaaaacaa 4873213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 5979785 - 5979853
Alignment:
Q  136 tcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||||||||||||| || ||   ||||||||||||||||||| ||||| || ||||||||| ||||    
T  5979785 tcagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 34290775 - 34290731
Alignment:
Q  171 tcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaa 215  Q
    |||||||||||||||| || ||||||||||||||||||| |||||    
T  34290775 tcatttccatgtgtttctaagaaacaatggatgtgagaacaacaa 34290731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 21538915 - 21538990
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaaca 196  Q
    ||||||| ||||||| |||||||| ||||||| |  ||   ||||||||||||||||| ||||||| |||||||||    
T  21538915 ttttctaattataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaaca 21538990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 24680851 - 24680790
Alignment:
Q  91 aaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaacta 152  Q
    ||||||| ||||||| ||||| |||  | ||| |||||||||||| ||||||||||||||||    
T  24680851 aaaaattcagcggtaattaactaccgtcggttctctagttataagccagcggtagttaacta 24680790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 21538890 - 21538850
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    |||||||| |||||||||||||| ||| |||||||||||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgt 21538850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 48292380 - 48292348
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaaca 196  Q
    |||||||||||||||||||||| ||||||||||    
T  48292380 tttttggtcatttccatgtgttattaggaaaca 48292348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 54734371 - 54734331
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||||||||||||||||| ||||| ||||| |||||||    
T  54734371 tttttggtcatttccatgtgtgtttagaaaacattggatgt 54734331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 11525 - 11428
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    |||||||||||||||||| || |||||||||||  | || ||||||||||||||||| ||| ||||| |||||||||||  |||||| |||| |||||    
T  11525 gttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaatt 11428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 19262 - 19165
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    |||||||||||||||||| || |||||||||||  | || ||||||||||||||||| ||| ||||| |||||||||||  |||||| |||| |||||    
T  19262 gttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaatt 19165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 30351529 - 30351432
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    ||||||||||||||||| ||  ||||||||||| || ||   ||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||    
T  30351529 gttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaatagatgtgagtaaaacaatt 30351432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 1317690 - 1317582
Alignment:
Q  86 gaccaaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgt-ttttggtcatttccatgtgt 184  Q
    |||||||||||| ||||||||||||| | || | ||||| ||||||||| |||||||||||||||||||  || || || |||| | |||||||||||||    
T  1317690 gaccaaaaaattcagcggtagttaactatcatcagttttttagttataaatcagcggtagttaactatcactg-aaggtattttagacatttccatgtgt 1317592  T
Q  185 ttttaggaaa 194  Q
    | ||||||||    
T  1317591 tattaggaaa 1317582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 30015139 - 30015052
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaa 209  Q
    |||||||  ||||||||  |||||||||||||| || ||||  ||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  30015139 gttttctgtttataagttcgcggtagttaactaccgctgtag-gtttttggtaattttcatgtgtttttaggaaacaat-gatgtgagaa 30015052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 9039513 - 9039544
Alignment:
Q  162 tgtttttggtcatttccatgtgtttttaggaa 193  Q
    ||||||||||||||||||||||||||||||||    
T  9039513 tgtttttggtcatttccatgtgtttttaggaa 9039544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 26452883 - 26452802
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggat 202  Q
    ||||||||||||||| ||||||||||||||||| | ||   ||||||||||||||| ||||||||| ||| |||||||||||    
T  26452883 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatggat 26452802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 32609456 - 32609372
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtg 205  Q
    |||||||||||||||||||||||| |||| ||||  || | |||||||| | |||||||||||||| ||| |||  |||||||||    
T  32609456 ttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctagaaaatgatggatgtg 32609372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 26452896 - 26452971
Alignment:
Q  142 gtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    |||||||||||| | || | | ||||||||||||| ||||||||| ||||||| |||||||||   ||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaatt 26452971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 31070731 - 31070669
Alignment:
Q  90 aaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaacta 152  Q
    |||||||| ||||||||||||  |||  |  ||||||||||||||||| ||||||||||||||    
T  31070731 aaaaaattcagcggtagttaattaccgtcaattttctagttataagtcggcggtagttaacta 31070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 29722834 - 29722871
Alignment:
Q  171 tcatttccatgtgtttttaggaaacaatggatgtgaga 208  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  29722834 tcattttcatgtgtttttagaaaacaatggatgtgaga 29722871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 27866674 - 27866754
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatgga 201  Q
    ||||||||||||||||||||||||||||||||||| |    |||||| |||||||| ||| ||||| ||||||||||||||    
T  27866674 ttttctagttataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatgga 27866754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 37701369 - 37701236
Alignment:
Q  90 aaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgttttta 189  Q
    |||||||| | ||||||||||| |||  |  |||| |||||||||||||||||||||||||||     | | |||||||| |||||||||| ||||| ||    
T  37701369 aaaaaattcaacggtagttaactaccgtcgattttttagttataagtcagcggtagttaactacaaccgaagtgtttttgatcatttccatatgtttcta 37701270  T
Q  190 ggaaacaatggatgtgagaaaaacaattgtcgtg 223  Q
     |||||||||||||| | ||||||| || |||||    
T  37701269 agaaacaatggatgtcaaaaaaacatttatcgtg 37701236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 22555392 - 22555289
Alignment:
Q  90 aaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgttttta 189  Q
    |||||||| ||||||||| ||| |||  | ||||||||||||||| ||| |||||||||||||||| |    |||||||||| || |||||||||| |||    
T  22555392 aaaaaattcagcggtagtaaactaccttcggttttctagttataaatcaacggtagttaactatcgttaaggtgtttttggttatgtccatgtgttatta 22555293  T
Q  190 ggaa 193  Q
    ||||    
T  22555292 ggaa 22555289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 48073132 - 48073166
Alignment:
Q  170 gtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    |||||||||||||||||||||||||||||||||||    
T  48073132 gtcatttccatgtgtttttaggaaacaatggatgt 48073166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 48073100 - 48073009
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 211  Q
    |||||||||||||||| |||   ||||||||||||| |  | | ||||||||||||||||||||||| ||  |||||| | ||||| |||||    
T  48073100 gttttctagttataagccagtaatagttaactatcgctagagtatttttggtcatttccatgtgtttctaataaacaaagaatgtgcgaaaa 48073009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 39933632 - 39933682
Alignment:
Q  167 ttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 217  Q
    |||||||||| ||||||||| ||| ||| |||||| |||||||||||||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatggaggtgagaaaaacaatt 39933682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 5617953 - 5617900
Alignment:
Q  99 agcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaacta 152  Q
    ||||||||||||  |||  | |||||||||||||||| ||||||||||||||||    
T  5617953 agcggtagttaattaccgccggttttctagttataagccagcggtagttaacta 5617900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 25939398 - 25939302
Alignment:
Q  103 gtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatg 199  Q
    ||||||||| |||| | ||||| |||||||||| |||||||||||||||| || |    ||||||||||| ||||||| ||||| ||||||||||||    
T  25939398 gtagttaactaccaccagttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatg 25939302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 28798969 - 28799020
Alignment:
Q  103 gtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatc 154  Q
    ||||||||| |||  | |||||||||||||||||||||||||||||||||||    
T  28798969 gtagttaactaccgccggttttctagttataagtcagcggtagttaactatc 28799020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 9040955 - 9040996
Alignment:
Q  163 gtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgt 9040996  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 26423805 - 26423773
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    ||||||||||||||||||||| |||||||||||    
T  26423805 gttttctagttataagtcagcagtagttaacta 26423773  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 39065426 - 39065315
Alignment:
Q  92 aaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttagg 191  Q
    |||||| ||||||||||||| | || |  |||| |||||||||||||||| ||||||||||||  || | |||||||  |||||||||| ||||| ||||    
T  39065426 aaaattcagcggtagttaactatcaccgattttttagttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttctagg 39065328  T
Q  192 aaacaatggatgt 204  Q
     ||||||||||||    
T  39065327 gaacaatggatgt 39065315  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 49632893 - 49632977
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    ||||||||||||||| ||||||||||||||||| |      |||||||||||||||||||||||||| ||| || ||||||||||    
T  49632893 gttttctagttataaatcagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaatcaatggatgt 49632977  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 8258992 - 8258908
Alignment:
Q  120 gttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtga 206  Q
    |||||||||||||||| || |  |||||||||| || ||  |  ||||| ||||||| |||||||||||||||||||||||||||||    
T  8258992 gttttctagttataagccaacaatagttaactaccgctg--agttttttagtcattttcatgtgtttttaggaaacaatggatgtga 8258908  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 7003240 - 7003146
Alignment:
Q  65 acagtttcctaaaaacacatg-----gaccaaaaaatttagcggtagttaaccaccaaccgttttctagttataagtcagcggtagttaactatc 154  Q
    ||||||||||| |||||||||     |||||||||| ||||||||||||||  | |||| |||||||  |||||||||| |||||||||| ||||    
T  7003240 acagtttcctagaaacacatgaaaatgaccaaaaaacttagcggtagttaattatcaacggttttctgtttataagtcaacggtagttaaatatc 7003146  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 30018687 - 30018729
Alignment:
Q  163 gtttttggtcatttccatgtgtttt-taggaaacaatggatgt 204  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgt 30018729  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 47059312 - 47059359
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 211  Q
    ||||| ||||||| |||||||||||| ||||||||| |||||||||||    
T  47059312 ttttttgtcattttcatgtgtttttaagaaacaatgaatgtgagaaaa 47059359  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 11985520 - 11985556
Alignment:
Q  122 tttctagttataagtcagcggtagttaactatcgatg 158  Q
    |||||||||||||||||||| |||||||||| |||||    
T  11985520 tttctagttataagtcagcgatagttaactaccgatg 11985556  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 43856378 - 43856410
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    ||||||||||||||||||||||||| |||||||    
T  43856378 gttttctagttataagtcagcggtaattaacta 43856410  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 49632889 - 49632849
Alignment:
Q  164 tttttggtcatttccatgtgtttttaggaaacaatggatgt 204  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  49632889 tttttggtcatttctatgtgtttctaggaaacaatagatgt 49632849  T

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Target: scaffold0197 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 26055 - 25983
Alignment:
Q  121 ttttctagttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaa 193  Q
    |||||||||||||||||||||||||||||||| || || |    |||| | |||||||||||||| |||||||    
T  26055 ttttctagttataagtcagcggtagttaactaccgttggaggtatttttgacatttccatgtgttattaggaa 25983  T

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Target: scaffold0258 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 19353 - 19321
Alignment:
Q  120 gttttctagttataagtcagcggtagttaacta 152  Q
    |||||||| ||||||||||||||||||||||||    
T  19353 gttttctatttataagtcagcggtagttaacta 19321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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