View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_117 (Length: 249)
Name: NF19175_low_117
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_117 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 12831497 - 12831289
Alignment:
| Q |
18 |
tgcaaccactgctggaaatttggctgatacttgtgggaagaaatgcaatggcaccactagttcagctgttctttcgcaacttggggatagtaatcaatat |
117 |
Q |
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| T |
12831497 |
tgcaaccactgctggaaatttggctgatacttgtgggaagaaatgcaatggcaccactagttcagctgttctttcgcaacttggggatagtaatcaatat |
12831398 |
T |
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| Q |
118 |
gtgaaaaatatgtgtgcaattacagtctccattgctaaccaattttctcaatcaaatcgtcaaactttaacataaattttttaggggtcatgctaacatg |
217 |
Q |
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| T |
12831397 |
gtgaaaaatatgtgtgcaattacagtctccattgctaaccaattttctcaatcaaatcgtcaaactttaacataaattttttaggggtcatgctaacatg |
12831298 |
T |
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| Q |
218 |
tgcaagggc |
226 |
Q |
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|||| |||| |
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| T |
12831297 |
tgcaggggc |
12831289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 12838324 - 12838141
Alignment:
| Q |
18 |
tgcaaccactgctggaaatttggctgatacttgtgggaagaaatgcaatggcaccactagttcagctgttctttcgcaacttggggatagtaatcaatat |
117 |
Q |
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| T |
12838324 |
tgcaaccactgctggaaatttggctgatacttgtgggaagaaatgcaatggcaccactagttcagctgttctttcgcaacttggggatagtaatcaatat |
12838225 |
T |
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| Q |
118 |
gtgaaaaatatgtgtgcaattacagtctccattgctaaccaattttctcaatcaaatcgtcaaactttaacataaattttttag |
201 |
Q |
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| T |
12838224 |
gtgaaaaatatgtgtgcaattacagtctccattgctacccaatttcctcaatcaactcaccaaattttaccataaattttttag |
12838141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 12812371 - 12812309
Alignment:
| Q |
89 |
tttcgcaacttggggatagtaatcaatatgtgaaaaatatgtgtgcaattacagtctccattg |
151 |
Q |
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| T |
12812371 |
tttcgccacttggagatagtaatcaatatgtgaaaaatatgtgtgcaattacagtctccattg |
12812309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 12812427 - 12812374
Alignment:
| Q |
18 |
tgcaaccactgctggaaat--ttggctgatacttgtgggaagaaatgcaatggc |
69 |
Q |
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| T |
12812427 |
tgcaaccactgctggaaataattggctgattcttgtgagaagaaatgcaatggc |
12812374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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