View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_118 (Length: 249)

Name: NF19175_low_118
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_118
NF19175_low_118
[»] chr1 (5 HSPs)
chr1 (4-239)||(11544911-11545146)
chr1 (48-233)||(35898736-35898921)
chr1 (154-237)||(44611440-44611523)
chr1 (192-236)||(44144599-44144643)
chr1 (158-236)||(44786066-44786144)
[»] chr3 (2 HSPs)
chr3 (65-237)||(26727221-26727393)
chr3 (192-236)||(8341623-8341667)
[»] scaffold0017 (2 HSPs)
scaffold0017 (38-239)||(173546-173747)
scaffold0017 (38-235)||(168541-168738)
[»] chr5 (1 HSPs)
chr5 (63-239)||(29508243-29508419)
[»] scaffold0061 (1 HSPs)
scaffold0061 (38-235)||(30054-30251)
[»] chr2 (4 HSPs)
chr2 (38-110)||(29228787-29228859)
chr2 (38-110)||(29342086-29342158)
chr2 (154-236)||(29228895-29228977)
chr2 (154-236)||(29342194-29342276)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 11544911 - 11545146
Alignment:
Q  4 tgtaactcagttattgaaggatttattgtagtcctttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11544911 tgtaactcagttattgaaggatttattgtagtcctttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggt 11545010  T
Q  104 tgctgcaacaaactcctttctttttacaacaatctgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgt 203  Q
    || |||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11545011 tgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgt 11545110  T
Q  204 gaggagtgcatgtctctccctctctttgcacttcat 239  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11545111 gaggagtgcatgtctctccctctctgtgcacttcat 11545146  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 35898921 - 35898736
Alignment:
Q  48 caaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtttcga 147  Q
    |||||| |||||||  |||||||||||||| |||||||||| |||||| ||||||||| ||||   ||||||||||  ||| || |||||||  ||| ||    
T  35898921 caaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttgga 35898822  T
Q  148 ttgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgca 233  Q
     | |  |||||||| ||||||||  | ||||  |||| ||||  |||||||||   |||||| |||||||||||||||||||||||    
T  35898821 ctatcattccatgtagacaacataccgtactcgtcttgaaggccttgtttgaaaccgaggagagcatgtctctccctctctttgca 35898736  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 44611523 - 44611440
Alignment:
Q  154 ttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 237  Q
    |||||||| ||||||||  |||||| ||||| ||||| |||||| || |||||||||||| |||||||||||||||||||||||    
T  44611523 ttccatgtggacaacataccatactcatcttgaaggtcttgtttaaacgtgaggagtgcacgtctctccctctctttgcacttc 44611440  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 44144643 - 44144599
Alignment:
Q  192 ttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 236  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  44144643 ttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactt 44144599  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 44786066 - 44786144
Alignment:
Q  158 atgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 236  Q
    |||| ||||||||| |||| | ||||| || |  ||||||||||||||||||||| |||||||| ||| ||||||||||    
T  44786066 atgtggacaacatgccataatcatcttgaatgccttgtttgaatgtgaggagtgcttgtctctcactcactttgcactt 44786144  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 26727393 - 26727221
Alignment:
Q  65 aaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtttcgattgttgttccatgtcga 164  Q
    ||||||||||||| || ||||||||||||||||||| |||| ||||  | |||||  ||  ||| || |||||||  ||| |||  |  |||||||| ||    
T  26727393 aaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatcatccttccatgtgga 26727294  T
Q  165 caacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 237  Q
    ||| ||| |||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  26727293 caaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 26727221  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 8341667 - 8341623
Alignment:
Q  192 ttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 236  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  8341667 ttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt 8341623  T

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Target: scaffold0017 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 173747 - 173546
Alignment:
Q  38 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatc 137  Q
    ||||||||| ||||| |||||||||||| ||||||| ||| ||||||||||||||||| |||| | || ||||   |||||| |||  ||| || |||||    
T  173747 tttcaccactcaaatgacgtgtttccgagccatgcagatcaagactttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatc 173648  T
Q  138 tgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 237  Q
    |   ||| ||  |   |||||||| ||||||||| |||| | ||||| ||||  ||||||||| |||||||||||  ||||||| |||||||||||||||    
T  173647 ttcattttgaccgcccttccatgtggacaacatgccataatcatcttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttc 173548  T
Q  238 at 239  Q
    ||    
T  173547 at 173546  T

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Target: scaffold0017; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 168738 - 168541
Alignment:
Q  38 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatc 137  Q
    ||||||||| |||| ||||||||||||||||||||| ||| ||  ||| ||||||||| ||||| ||| ||||   |||||| |||  ||| || |||||    
T  168738 tttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatc 168639  T
Q  138 tgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcact 235  Q
    ||  ||| |||  |  |||||||| ||||||||  |||| | ||||| ||||  |||||| || |||| ||||| |||||||||||| ||||||||||    
T  168638 tgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcact 168541  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 29508243 - 29508419
Alignment:
Q  63 cgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtttcgattgttgttccatgtc 162  Q
    ||||||||||| ||| || |||||||||||||||||||| ||| |||| | |||||| |||  ||| || ||||||   ||| | | ||  ||||||||     
T  29508243 cgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtg 29508342  T
Q  163 gacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttcat 239  Q
    ||||||||| |||||| ||||| ||||  || ||||||| |||||||||||| ||||||| ||||||  ||||||||    
T  29508343 gacaacatgccatactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctcttcacacttcat 29508419  T

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Target: scaffold0061 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 30054 - 30251
Alignment:
Q  38 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatc 137  Q
    ||||||||| |||| ||||||||||||||||||||| ||| ||  ||| ||||||||| ||||| ||| ||||   |||||| |||  ||| || |||||    
T  30054 tttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatc 30153  T
Q  138 tgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcact 235  Q
    ||  ||| |||  |  |||||||| ||||||||  |||| | ||||| ||||  |||||| || |||| ||||| |||||||||||| ||||||||||    
T  30154 tgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcact 30251  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 29228787 - 29228859
Alignment:
Q  38 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgca 110  Q
    ||||||||| ||||||   ||||||||||| ||||| ||| ||||||||||||||||| ||||||||| ||||    
T  29228787 tttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataaccagtttggttgttgca 29228859  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 29342086 - 29342158
Alignment:
Q  38 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgca 110  Q
    ||||||||| ||||||   ||||||||||| ||||| ||| ||||||||||||||||| ||||||||| ||||    
T  29342086 tttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataaccagtttggttgttgca 29342158  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 29228895 - 29228977
Alignment:
Q  154 ttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 236  Q
    ||||||||  |||||||| ||| || ||||| ||||  |||||||||  |||| ||||| |||||||||||||||||||||||    
T  29228895 ttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctccctctctttgcactt 29228977  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 29342194 - 29342276
Alignment:
Q  154 ttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 236  Q
    ||||||||  |||||||| ||| || ||||| ||||  |||||||||  |||| ||||| |||||||||||||||||||||||    
T  29342194 ttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctccctctctttgcactt 29342276  T

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