View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_120 (Length: 248)
Name: NF19175_low_120
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 35904724 - 35904505
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904724 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca |
35904625 |
T |
|
| Q |
111 |
aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904624 |
aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa |
35904525 |
T |
|
| Q |
211 |
aaggtagttttggatatttg |
230 |
Q |
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|||||||||||||||||||| |
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| T |
35904524 |
aaggtagttttggatatttg |
35904505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 47624519 - 47624731
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca |
110 |
Q |
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||||||||| || ||||| ||||| || ||||||||||| ||||| ||||||||||| || || |||||||| || |||||||||||||| ||||||||| |
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| T |
47624519 |
gaagcaaagattagagatctgcatcggagctgcaagagggcttcactaccttcacacgggggccaagtacaccatcattcatagagatgtcaaaacaaca |
47624618 |
T |
|
| Q |
111 |
aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa |
210 |
Q |
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|| ||||| | || ||||| | ||| ||||| ||||||||||| ||||| ||||| |||||| || ||||| || ||||||||||| ||||| | |
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| T |
47624619 |
aatattctcttggacgaaaactggaatgccaaggtatcagattttgggttgtcaaaaactggtccagatttgaacgctggccatgttagtactgtggtga |
47624718 |
T |
|
| Q |
211 |
aaggtagttttgg |
223 |
Q |
| |
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| ||||||||||| |
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| T |
47624719 |
agggtagttttgg |
47624731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 27539429 - 27539593
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca |
110 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| ||||||| || || |||||||| ||||| || || || || || || | |||||||| || ||| |
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| T |
27539429 |
gaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacaccggtgctaaatataccatcatccaccgtgatgtgaagactaca |
27539528 |
T |
|
| Q |
111 |
aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtcc |
175 |
Q |
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|||||| | |||||||| || | || || |||||||| |||||||||||||| ||||| ||||| |
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|
| T |
27539529 |
aacattttactagatgagaagtgggtggccaaggtttctgattttggattgtctaaaacaggtcc |
27539593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 39543104 - 39543049
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
66 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39543104 |
gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca |
39543049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 39574939 - 39574884
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
66 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39574939 |
gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca |
39574884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 39510039 - 39509984
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
66 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
39510039 |
gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
39509984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 39579472 - 39579417
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
66 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
39579472 |
gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
39579417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 21601648 - 21601692
Alignment:
| Q |
88 |
ttcatagagatgtgaaaacaacaaacattcttctagatgaaaatt |
132 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
21601648 |
ttcatagagatgtgaaatcaaccaacattcttctagatgaaaatt |
21601692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 46271667 - 46271831
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca |
110 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| ||||||| || || |||||||| ||||| || || || || || || | |||||||| || ||| |
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| T |
46271667 |
gaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacaccggtgctaaatataccatcatccaccgtgatgtgaagactaca |
46271766 |
T |
|
| Q |
111 |
aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtcc |
175 |
Q |
| |
|
|||||| | |||||||| || | || || |||||||| |||||||||||||| ||||| ||||| |
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|
| T |
46271767 |
aacattttactagatgagaagtgggtggccaaggtttctgattttggattgtctaaaacaggtcc |
46271831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 50421892 - 50421836
Alignment:
| Q |
11 |
gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac |
67 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
50421892 |
gaagcaaaggttggaaatttgcattggtgctgcaaggagacttgattaccttcacac |
50421836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 13973866 - 13973814
Alignment:
| Q |
15 |
caaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac |
67 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
13973866 |
caaaggttggacatttgcattggatcggcaagaggtcttcattaccttcacac |
13973814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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