View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19175_low_123 (Length: 247)

Name: NF19175_low_123
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19175_low_123
NF19175_low_123
[»] chr6 (4 HSPs)
chr6 (2-233)||(587060-587290)
chr6 (51-85)||(31434440-31434474)
chr6 (51-84)||(1008051-1008084)
chr6 (51-84)||(5258147-5258180)
[»] chr2 (1 HSPs)
chr2 (139-213)||(36872911-36872985)
[»] chr8 (1 HSPs)
chr8 (51-84)||(21121395-21121428)
[»] chr7 (1 HSPs)
chr7 (51-84)||(40630684-40630717)
[»] chr4 (2 HSPs)
chr4 (51-84)||(29399054-29399087)
chr4 (51-84)||(32633405-32633438)
[»] chr1 (5 HSPs)
chr1 (51-84)||(4001454-4001487)
chr1 (51-84)||(4318844-4318877)
chr1 (51-84)||(7133301-7133334)
chr1 (51-84)||(37311754-37311787)
chr1 (51-84)||(41165532-41165565)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 587290 - 587060
Alignment:
Q  2 gcatatagttcagcctgcaattcgtcatgagacggtcatgatgaagcaaccacttagtgggaaaagtcttggttgttgttgtttgaattaaatctaactt 101  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||   |||||    
T  587290 gcatatagttcaatctgcaattcgtcatgagacggtcatgatgaagcagccacttagtggaaaaagtcttggttgttgttatttgaattaaa---aactt 587194  T
Q  102 ctaggaaccacaatttatattgaccagaaattctcgagcactaaattttgataaagaaatattctggatcaaagtgatgcaaacgtacatatccatcttc 201  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  587193 ctagaaaccacaatttatattgaccagaaattctcgagcactaaatttggatatagaaatattctggatcaaagtgatgcaaacgtacatatccatcttc 587094  T
Q  202 tcctccacttgataaccac--aacaaaaagattg 233  Q
    |||||||||||||||||||  |||||||||||||    
T  587093 tcctccacttgataaccacaaaacaaaaagattg 587060  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 31434474 - 31434440
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgttt 85  Q
    ||||||||||||| |||||||||||||||||||||    
T  31434474 ccacttagtgggataagtcttggttgttgttgttt 31434440  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 1008084 - 1008051
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  1008084 ccacttagtgggaaaaggcttggttgttgttgtt 1008051  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 5258180 - 5258147
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||| ||||||||||||||||||||    
T  5258180 ccacttagtgggataagtcttggttgttgttgtt 5258147  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 36872985 - 36872911
Alignment:
Q  139 gcactaaattttgataaagaaatattctggatcaaagtgatgcaaacgtacatatccatcttctcctccacttga 213  Q
    ||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36872985 gcactaaattttgatattgaaataatctgggtcaaagtgatgcaaacgtacatatccatcttctcctccacttga 36872911  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 21121395 - 21121428
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  21121395 ccacttagtgggaaaaggcttggttgttgttgtt 21121428  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 40630684 - 40630717
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  40630684 ccacttagtgggaaaaggcttggttgttgttgtt 40630717  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 29399054 - 29399087
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  29399054 ccacttagtgggaaaaggcttggttgttgttgtt 29399087  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 32633438 - 32633405
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  32633438 ccacttagtgggaaaaggcttggttgttgttgtt 32633405  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 4001487 - 4001454
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  4001487 ccacttagtgggaaaaggcttggttgttgttgtt 4001454  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 4318877 - 4318844
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  4318877 ccacttagtgggaaaaggcttggttgttgttgtt 4318844  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 7133334 - 7133301
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  7133334 ccacttagtgggaaaaggcttggttgttgttgtt 7133301  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 37311787 - 37311754
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  37311787 ccacttagtgggaaaaggcttggttgttgttgtt 37311754  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 41165532 - 41165565
Alignment:
Q  51 ccacttagtgggaaaagtcttggttgttgttgtt 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  41165532 ccacttagtgggaaaaggcttggttgttgttgtt 41165565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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