View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_124 (Length: 247)
Name: NF19175_low_124
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_124 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 32261668 - 32261459
Alignment:
| Q |
37 |
gttcatgtggtgtacaatacttgaaaatctttcaaaactttaaattacaatcaaaattattgtatttaaatagaagttcaattcgtctaagtaattatat |
136 |
Q |
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| T |
32261668 |
gttcatgtggtgtaaaatacttgaaaatctttcaaaattttaaattacaaccaaagtcatt-tatttaaatagaagttcaattcgtctaagtaattatat |
32261570 |
T |
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| Q |
137 |
ttgagagttgagacaatgacctgatcagtgttaataaaacaaaaacagtataaaaagaatatatattgaattttgaggtactaaaatttatttttattgt |
236 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
32261569 |
ttgagagttgagacaatgacctgatcaatgttaataaaacaaaaacagtataaaaagaatatatattaaattttgaggtactaatatttatttttattgt |
32261470 |
T |
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| Q |
237 |
ctatcttttgc |
247 |
Q |
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||||||||||| |
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| T |
32261469 |
ctatcttttgc |
32261459 |
T |
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