View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_125 (Length: 246)
Name: NF19175_low_125
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_125 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 36260097 - 36260275
Alignment:
| Q |
9 |
aatacaaactcaaactcatgaactacattcacgtcagtttgttatttcttaaat-aaaacatttcgatgaaacaatcacctcttttcaaatgagagagat |
107 |
Q |
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| T |
36260097 |
aatacaaactcaaactcatgaactacattcacgtcagtttgttatttcttaaattaaaacatttcgatgaaacaatcacctcttttcaaatgagagagat |
36260196 |
T |
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| Q |
108 |
agcatatatgcactttcttaatttaatcttatattgatatttcgaaatttcttagaactatatgtgtattatttttaac |
186 |
Q |
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| T |
36260197 |
agcatatatgcactttcttaatttaatcttatattgatatttcgaaatttcatagaactatatgtgtattatttttaac |
36260275 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 36260299 - 36260329
Alignment:
| Q |
212 |
aaacatatactagaaccaaagtgacctatga |
242 |
Q |
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| T |
36260299 |
aaacatatactagaaccaaagtgacctatga |
36260329 |
T |
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