View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19175_low_126 (Length: 242)
Name: NF19175_low_126
Description: NF19175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19175_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35441466 - 35441688
Alignment:
| Q |
1 |
agttgtgtattaaaattcagacaccccgcgcttgcggccacacacacatcctgtgtgtatgtgtgtnnnnnnnnnnnnnnncattattaaaattttgaag |
100 |
Q |
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|||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||||||||| |||||||||||||| |||| |
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| T |
35441466 |
agttgtgtattaaaattcagacaccctgcacgtgcggccacacacacatactgtgtgtatgtgtgtgagagagagag----cattattaaaatttagaag |
35441561 |
T |
|
| Q |
101 |
tccaagaattcttttcttaaaaatatttgaaattaaactctgtttattttatattccaggaaaaaccttccaatggttgctcttttcgccctccaccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35441562 |
tccaagaattcttttcttaaaaatatttgaaattaaaccgtgtttattttatattccaggaaaaaccttccaatggttgctcttttcgccctccaccaat |
35441661 |
T |
|
| Q |
201 |
gtgcaaaccattccagatgacattttt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35441662 |
gtgcaaaccattccagatgacattttt |
35441688 |
T |
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